plotIsoboles: Plot isoboles for a specified synergy experiment

In ybukhman/SynergyScreen: Analyze and simulate synergy screen data

Description

Plot isoboles for a synergy experiment that is part of a screen.

Usage

plotIsoboles(object, ...)

## S4 method for signature 'SynergyScreen'
plotIsoboles(object, experiment, effect = c(0.25,
  0.5, 0.75), model = "menls", xlab = NULL, ylab = NULL, ...)

Arguments

object	a SynergyScreen object
...	additional arguments passed to the generic plot function
experiment	string, name of the synergy experiment to plot
effect	vector of fractional effect values to draw the isoboles for, numeric
model	name of the growth curve model to use, character
xlab	a title for the x axis. If left unspecified, appropriate default is chosen.
ylab	a title for the y axis. If left unspecified, appropriate default is chosen.

Details

The experiment must be listed in the synergy_experiment_list slot of a SynergyScreen object

The effect values should be between 0 and 1, e.g. 0.5 to compute interaction index at IC50, 0.25 to compute IC25 (25 Corresponding value of the response variable is defined as control.response*(1-effect)

See Also

plot,SynergyExperiment-method, SynergyScreen

Examples

data(sim15_screen3)
plotIsoboles(sim15_screen3,"Cpd1-Cpd2")

ybukhman/SynergyScreen documentation built on May 4, 2019, 2:31 p.m.