Files in ybukhman/SynergyScreen
Analyze and simulate synergy screen data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Compound.R
R/CompoundList.R
R/DRE-accessors.R
R/DRE.R
R/DREList.R
R/DRModel.R
R/Functions.R
R/Model.R
R/ScreenData.R
R/ScreenDesign.R
R/SynergyData.R
R/SynergyExperiment.R
R/SynergyExperimentList.R
R/SynergyScreen-accessors.R
R/SynergyScreen.R
R/checkRange.R
R/computeSynergies.R
R/datasetAnnotations.R
R/designSummary.R
R/dreData.R
R/findSynergies.R
R/fit.R
R/generateDesign.R
R/labelledData.R
R/plotIsoboles.R
R/predict.R
R/simulate.R
R/transferTrueValues.R
R/writeWide.R
SynergyScreen.Rproj
data/sim15_screen3.RData
inst/extdata/15_cpds_simulation/15_cpds_save_data.R
inst/extdata/15_cpds_simulation/15_cpds_sim_results.RData
inst/extdata/15_cpds_simulation/15_cpds_simulation.R
inst/extdata/15_cpds_simulation/compounds_1.csv
inst/extdata/15_cpds_simulation/compounds_2.csv
inst/extdata/15_cpds_simulation/compounds_3.csv
inst/extdata/8_compounds/8_compounds.csv
inst/extdata/8_compounds/8_compounds_OD_data.csv
inst/extdata/8_compounds/8_compounds_design.csv
inst/extdata/8_compounds/8_compounds_design_actually_used.csv
inst/extdata/8_compounds/8_compounds_design_summary.csv
man/Compound-class.Rd
man/CompoundList-class.Rd
man/DRE-accessors.Rd
man/DRE-class.Rd
man/DREList-class.Rd
man/DRModel-class.Rd
man/DRModelLOESS-class.Rd
man/DRModelMElm-class.Rd
man/DRModelMEnls-class.Rd
man/Model-class.Rd
man/ScreenData-class.Rd
man/ScreenDesign-class.Rd
man/SynergyData-class.Rd
man/SynergyExperiment-class.Rd
man/SynergyExperimentList-class.Rd
man/SynergyScreen-accessors.Rd
man/SynergyScreen-class.Rd
man/SynergyScreen-package.Rd
man/boxplot-SynergyScreen-method.Rd
man/character-class.Rd
man/checkRange.Rd
man/computeSynergies.Rd
man/designFile2SynergyScreen.Rd
man/designSummary.Rd
man/dreData.Rd
man/effectiveDose.Rd
man/findSynergies.Rd
man/fit.Rd
man/generateDesign.Rd
man/initialize-DRE-method.Rd
man/initialize-SynergyExperiment-method.Rd
man/interactionIndex.Rd
man/labelledData.Rd
man/lm-class.Rd
man/loess-class.Rd
man/meq.Rd
man/nls-class.Rd
man/normalize-SynergyScreen-method.Rd
man/plot-DRE-missing-method.Rd
man/plot-SynergyExperiment-missing-method.Rd
man/plot-SynergyScreen-missing-method.Rd
man/plotIsoboles.Rd
man/plotMEQ.Rd
man/predict-DRModelLOESS-method.Rd
man/predict-DRModelMElm-method.Rd
man/predict-DRModelMEnls-method.Rd
man/readCompoundFile.Rd
man/readTecanData.Rd
man/readTecanFile.Rd
man/readWideData.Rd
man/readWideDataFlex.Rd
man/sim15_screen3.Rd
man/simulate.Rd
man/transferTrueValues.Rd
man/writeWide.Rd
tests/testthat.R
tests/testthat/test_compute_synergy.R
tests/testthat/test_design.R
tests/testthat/test_designSummary.R
tests/testthat/test_simulate.R
vignettes/Introduction-to-SynergyScreen.Rmd
vignettes/SynergyScreen-quick-start.Rmd
vignettes/simulation-of-15-compound-screen.Rmd
