Description Usage Arguments Details Value Methods (by class) See Also
Design specifies compound treatments, untreated controls and blanks that go in each well of a set of microtiter plates.
1 2 3 4 5 6 7 8 9 10 11 | generateDesign(object, ...)
## S4 method for signature 'DREList'
generateDesign(object, dre.orientation, control.orientation,
use.edge, digits = 3)
## S4 method for signature 'SynergyScreen'
generateDesign(object, type = "5 doses exp",
dre.orientation = NULL, control.orientation = NULL,
dose.series.type = NULL, use.edge = NULL, singles = T, pairs = T,
digits = 3)
|
object |
an object of supported type, e.g. |
... |
method-specific arguments: see below |
dre.orientation |
character. Must be set if |
control.orientation |
character. Must be set if |
use.edge |
logical. Must be set if |
digits |
number of decimal places in dose values |
type |
design type. Supported types include "5 doses exp", "8 doses linear", "12 doses exp", and "custom". See Details. |
dose.series.type |
character type of dose series. Must be set if |
singles |
logical: if singles = T, include dose-response experiments for individual compounds
( |
pairs |
logical: if pairs = T, include dose-response experiments for compound pairs
( |
Screen design is represented as a data frame. A SynergyScreen
object has slots
returns a SynergyScreen object with populated @design, @dre_list and,
if pairs=T
, @synergy_experiment_list slots
returns a data frame that represents experimental design
DREList
: Generate design from a DREList
object
Taking a DREList
object as input, generate a microtiter plate design showing what to put in
each well.
SynergyScreen
: Taking a SynergyScreen
object as input, generate a microtiter plate
design showing what to put in each well.
This method also sets up dose-response experiment objects in object@dre_list and synergy experiment objects in object@synergy_experiment_list
SynergyScreen
, DREList
, DRE
,
SynergyExperimentList
, SynergyExperiment
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