plot-SynergyExperiment-missing-method: Plot a SynergyExperiment object

In ybukhman/SynergyScreen: Analyze and simulate synergy screen data

Description

Isobole plot of a single ray experiment

Usage

## S4 method for signature 'SynergyExperiment,missing'
plot(x, y, dre.list, effect = c(0.25,
  0.5, 0.75), model = "menls", xlab = NULL, ylab = NULL, ...)

Arguments

x	object of class SynergyExperiment
y	no parameter y is defined for this method
dre.list	a list of DRE objects where the data come from
effect	vector of fractional effect values to draw the isoboles for, numeric
model	name of the growth curve model to use, character
xlab	a title for the x axis. If left unspecified, appropriate default is chosen.
ylab	a title for the y axis. If left unspecified, appropriate default is chosen.
...	additional arguments passed to the generic plot function

Details

plotIsoboles is a convenient wrapper for this method.

effect value should be between 0 and 1, e.g. 0.5 to compute interaction index at IC50, 0.25 to compute IC25 (25 Corresponding value of the response variable is defined as control.response*(1-effect)

See Also

plotIsoboles SynergyExperiment, DRE, effectiveDose, plot

Examples

data(sim15_screen3)
plot(synergy_experiment(sim15_screen3,"Cpd1-Cpd2"), dre.list=dre_list(sim15_screen3))

ybukhman/SynergyScreen documentation built on May 4, 2019, 2:31 p.m.