SynergyScreen-class: S4 class for a synergy screen

In ybukhman/SynergyScreen: Analyze and simulate synergy screen data

Description

A SynergyScreen class object contains all data for an entire synergy screen

Slots

design

design of the screen, object of class ScreenDesign

raw_data

raw screen data, object of class ScreenData

norm_data

normalized screen data, object of class ScreenData

compound_list

list of compounds screened, object of class CompoundList

dre_list

list of dose-response experiments, object of class DREList

synergy_experiment_list

list of synergy experiments, object of class SynergyExperimentList

synergy_data

interaction index data

See Also

ScreenDesign, ScreenData, Compound, CompoundList, DRE, DREList, SynergyExperiment, SynergyExperimentList, SynergyData

Examples

data(sim15_screen3)
head(design(sim15_screen3),n=30)
head(raw_data(sim15_screen3))
head(norm_data(sim15_screen3))
compound_list(sim15_screen3)[1:2]
dre_list(sim15_screen3)[1:2]
synergy_experiment_list(sim15_screen3)[1:2]
head(synergy_data(sim15_screen3))

ybukhman/SynergyScreen documentation built on May 4, 2019, 2:31 p.m.