writeWide: Write out a data frame-like object in a wide format

In ybukhman/SynergyScreen: Analyze and simulate synergy screen data

Description

Write out a data frame-like object in a wide format

Usage

writeWide(object, ...)

## S4 method for signature 'ScreenDesign'
writeWide(object, file = "", blank = "blank",
  untreated = "untreated", nothing = "NULL", ...)

Arguments

object	a ScreenDesign object
...	other parameters to pass to write.table
file	either a character string naming a file or a connection open for writing. "" indicates output to the console.
blank	string to use for blank wells
untreated	string to use for untreated control wells, e.g. the name of the growth medium
nothing	string to use in cases where nothing should be added to a well

Details

A ScreenDesign object is a data frame in a "long" format. This function converts it to wide, e.g. 8X12 for a 96 well plate, then writes it out to a file in CSV format

Methods (by class)

• ScreenDesign: Write out screen design data in a wide format

See Also

ScreenDesign, write.table

Examples

compounds = readCompoundFile(system.file("extdata/8_compounds/8_compounds.csv",
                                         package="SynergyScreen"))
screen = new("SynergyScreen", compound_list=compounds)
screen = generateDesign(screen, type="12 doses exp")
writeWide(design(screen), file="8_compounds_design_wide.csv")

ybukhman/SynergyScreen documentation built on May 4, 2019, 2:31 p.m.