ploidy_-: Setter Method for the 'ploidy' slot in an 'parameterOptions'...

In ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites

Description

Setter Method for the ploidy slot in an parameterOptions object

Usage

ploidy(object)<- value

Arguments

object	object is a parameterOptions object
value	value is a positive integer that describes the ploidy of the organism of interest.

Details

Default value for ploidy is set a 2. It should be mentioned that ChIPanalyser is based on a model that also considers the ploidy of the organism however this only considers simple polyploidy (or haploidy). T he model does not consider hybrids such as wheat.

Value

Returns a parameterOptions object with an updated value for the ploidy slot.

Author(s)

Patrick C. N. Martin <[e-mail]>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.

Examples

# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
ploidy(OPP) <- 2

ChIPanalyser documentation built on Nov. 8, 2020, 8:23 p.m.