whichstrand: Accessor method for the 'whichstrand' slot in a...
In ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites

Description Usage Arguments Details Value Author(s) References Examples

Accessor method for the whichstrand slot in a parameterOptions object

1	whichstrand(object)

object

object is a parameterOptions object

PWM Score may be computed on either the positive strand ("+"), the negative strand ("-") or on both strands ("+-").

Returns on which strand PWM Scores should be computed ( whichstrand in a parameterOptions object)

Patrick C. N. Martin <pm16057@essex.ac.uk>

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84<e2><80><93>94.

# Loading data
data(ChIPanalyserData)

#Building data objects
GPP <- parameterOptions( whichstrand="+-")
#Setting New Value for whichstrand
whichstrand(GPP)