writeScores: Write DE/DS scores and gene scores

In SeqGSEA: Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

Description

This function is to write DE and DS scores, and optionally gene scores.

Usage

writeScores(DEscore, DSscore, geneScore=NULL, geneScoreAttr=NULL, file="")

Arguments

DEscore	normalized DE scores.
DSscore	normalized DS scores.
geneScore	gene scores integrated from DE and DS scores.
geneScoreAttr	the parameters for integrating DE and DS scores.
file	output file name, if not specified print to screen.

Author(s)

Xi Wang, [e-mail]

See Also

DEscore, geneScore

Examples

data(DEscore, package="SeqGSEA")
data(DSscore, package="SeqGSEA")
gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3)
writeScores(DEscore, DSscore) # without gene scores
writeScores(DEscore, DSscore, geneScore = gene.score, 
            geneScoreAttr = "linear,0.3") # gene scores with attr.

SeqGSEA documentation built on Nov. 8, 2020, 5:46 p.m.