Files in Certara.RsNLME

Pharmacometric Modeling

README.md R/NlmeRandomEffectBlock.r R/parse_mmdl.R R/covariateModel.R R/shotgunSearch.R R/CovariateEffectModel.R R/log_Execution.R R/data.r R/parseControlFile.R R/GenerateParamsfile.R R/dosing.r R/pml_model.r R/copyModel.R R/built_in_models.r R/NlmeIndirectParameters.R R/pklinearmodel.R R/GenerateControlfile.R R/fitmodel.R R/addInfusion.R R/linearmodel.R R/create_model_from_metamodel.R R/fixedEffect.R R/fitmodelHelperFunctions.R R/SortColumns.R R/StepwiseNlmeJob.R R/parsePMLColMap.R R/checkHostParams.R R/error_model.r R/pkemaxmodel.R R/structural_param.r R/ProfileParameters.R R/RandomEffectsMethods.R R/NlmePkParameters.R R/BootNlmeJob.R R/generateCovarSearchArgsFile.R R/NlmeEmaxParameters.R R/NlmeColumnMapping.r R/simParams.R R/profile_estimation.r R/ShotgunNlmeJob.R R/NlmeParallelHost.R R/SimpleNlmeJob.R R/observation.r R/get_omega_omegaSE.R R/getThetas.R R/NlmeModelAbsorption.R R/run_metamodel.R R/colMapping.R R/randomEffect.R R/StepwiseParams.R R/bootstrap.r R/NlmeRemoteExecutor.R R/acceptAllEffects.R R/pkindirectmodel.R R/writeDefaultFiles.R R/ProfileNlmeJob.R R/ProfileVar.R R/map_dosepoints.R R/covariateNames.R R/vpc.r R/NlmeModelType.R R/NlmePmlModelInfo.R R/SortByNlmeJob.R R/job.r R/addLabel.R R/NlmeModelParameterization.R R/NlmeDataset.r R/tableParams.R R/hostParams.R R/createInitialMapping.R R/NlmeParamsMapping.R R/secondary_variable.r R/saveModel.R R/NlmeParallelMethod.R R/emaxmodel.R R/engine_params.r R/obtain_NLMELicense.R R/NlmeRandParamsMapping.R R/editModel.R R/globals.R R/map_covariates.R R/NlmeCovariateParameter.r R/parameterNames.R R/NlmeDoseMapping.R R/pkmodel.R R/BootstrapParams.R R/sortfit.R R/saveUpdatedMetamodel.R R/writeColumnMapping.R R/add_input_dosingCycles.R R/stepwiseSearch.R R/modelVariableNames.R R/addTablesToColumnMapping.R R/readInitialEstimatesParams.R R/create_model_info.R R/NlmeUserAuthentication.R R/extract_mmdl.R R/NlmeScenario.R R/update_PMLwithThetas.R R/NlmeTableDef.R tests/testthat.R tests/testthat/test_checkHostParams.r tests/testthat/test_bootstrapInit.r tests/testthat/test_profile.r tests/testthat/test_parsePmlColMap.R tests/testthat/test_bootstrap.r tests/testthat/test_random_effects.r tests/testthat/test_covar.r tests/testthat/test_NlmeJobStatus.r tests/testthat/test_residual_effect.r tests/testthat/test_mmdl.r tests/testthat/test_simple_estimation.r tests/testthat/test_units.r tests/testthat/test_covModel.R tests/testthat/test_dosing.r tests/testthat/test_writeColumnMapping.r tests/testthat/test_thetasMmdlChange.r tests/testthat/test_vpc.r tests/testthat/test_pk_2c_intravenous_ode.r tests/testthat/test_categoricalObs.R tests/testthat/test_pk_1c_extravascular_ode.r tests/testthat/test_stepwise.r tests/testthat/test_sortby.r tests/testthat/test_extract_mmdl.R tests/testthat/test_builtin_mapping.R tests/testthat/test_tableColDefs.R tests/testthat/test_NlmeEngineExtraparams.r tests/testthat/test_NlmeParallelHost.r tests/testthat/test_distrDelay.r tests/testthat/test_error_model.r tests/testthat/test_mmdlBlocks.R tests/testthat/test_fixed_effects.r tests/testthat/test_shotgun.r tests/testthat/_snaps/covar.md tests/testthat/_snaps/tableColDefs.md tests/testthat/_snaps/mmdlBlocks.md tests/testthat/_snaps/writeColumnMapping.md tests/testthat/_snaps/checkHostParams.md tests/testthat/_snaps/categoricalObs.md tests/testthat/_snaps/simple_estimation.md tests/testthat/_snaps/builtin_mapping.md tests/testthat/_snaps/shotgun.md tests/testthat/_snaps/covModel.md tests/testthat/_snaps/vpc.md tests/testthat/_snaps/NlmeJobStatus.md tests/testthat/_snaps/stepwise.md tests/testthat/_snaps/NlmeParallelHost.md man/acceptAllEffects.Rd man/NlmeTableDef-class.Rd man/pkindirectmodel_MappingParameters.Rd man/doseNames.Rd man/pkemaxmodel.Rd man/BootstrapParams-class.Rd man/RunProfilePertubation.Rd man/NlmeObservationVar-class.Rd man/tableParams.Rd man/addSecondary.Rd man/NlmeScenario-class.Rd man/NlmeStrucParamStyle.Rd man/addLabel.Rd man/ExtraDoseItem-class.Rd man/pklinearmodel.Rd man/addDoseCycle.Rd man/NlmeModelType-class.Rd man/ResetColumnInfo-class.Rd man/bootstrap.Rd man/NlmeSimTableDef-class.Rd man/obtain_NLMELicense.Rd man/NlmeDataset-class.Rd man/saveModel.Rd man/engineParams.Rd man/pkindirectmodel.Rd man/NlmeStructuralParameter-class.Rd man/vpcmodel.Rd man/remove_NLMELicense.Rd man/NlmeRandomEffectBlock.Rd man/covariateEffect-set.Rd man/linearmodel.Rd man/parse_NLMEHosts.Rd man/NlmeParallelMethod-class.Rd man/checkHostParams.Rd man/stepwiseSearch.Rd man/OneCpt_IVInfusionData.Rd man/NlmeCovariateParameter-class.Rd man/initFixedEffects.Rd man/writeDefaultFiles.Rd man/covariatePartsString.Rd man/randomOccasionalBlockStatement.Rd man/extract_mmdl.Rd man/generatePML.Rd man/simmodel.Rd man/create_model_from_metamodel.Rd man/NlmeCovarItem-class.Rd man/print.SimpleNlmeJob.Rd man/emaxmodel_MappingParameters.Rd man/pkpdData.Rd man/NlmePmlModel-class.Rd man/NlmeJobStatus.Rd man/covariateNames.Rd man/print.NlmeParallelHost.Rd man/addExtraDef.Rd man/getRandomEffectNames.Rd man/pkcovbqlData.Rd man/extraDoseNames.Rd man/print.NlmeEngineExtraParams.Rd man/addInfusion.Rd man/addTablesToColumnMapping.Rd man/colMapping.Rd man/SecondaryParameter-class.Rd man/observationNames.Rd man/residualEffect-set.Rd man/generatePMLModel.Rd man/initializeRandomEffectsBlock.Rd man/addSteadyState.Rd man/shotgunSearch.Rd man/NlmeRandParamsMapping-class.Rd man/removeCovariate.Rd man/NlmeRandomEffectValues-class.Rd man/NlmeEmaxParameters-class.Rd man/residualEffectNames.Rd man/NlmeParallelHost-class.Rd man/editModel.Rd man/NlmePkParameters-class.Rd man/residualError.Rd man/secondaryParameterNames.Rd man/randomBlockStatement.Rd man/NlmeUserAuthentication-class.Rd man/SortColumns-class.Rd man/NlmeParamsMapping-class.Rd man/addCovariate.Rd man/NlmeDoseMapping-class.Rd man/addADDL.Rd man/createModelInfo.Rd man/NlmeColumnMapping-class.Rd man/covariateModel.Rd man/fitmodel.Rd man/modelVariableNames.Rd man/NlmeColumnMap-class.Rd man/ProfileVar-class.Rd man/hostParams.Rd man/parsePMLColMap.Rd man/emaxmodel.Rd man/NlmeIndirectParameters-class.Rd man/StepwiseParams-class.Rd man/randomEffect.Rd man/NlmeSimulationParams-class.Rd man/structuralParam-set.Rd man/dataMapping.Rd man/NlmeModelParameterization-class.Rd man/extraDoseLines.Rd man/loadModel.Rd man/structuralParameterNames.Rd man/linearmodel_MappingParameters.Rd man/ExtraDoseDataType-class.Rd man/fixedEffect.Rd man/addToErrorModel.Rd man/NlmeEngineExtraParams-class.Rd man/run_metamodel.Rd man/DosePoint-class.Rd man/listCovariateEffectNames.Rd man/sortfit.Rd man/copyModel.Rd man/cancelJob.Rd man/textualmodel.Rd man/structuralParameter.Rd man/ProfileParameters-class.Rd man/pkData.Rd man/pkmodel.Rd man/deleteSecondary.Rd man/NlmeResidualEffect-class.Rd man/addMDV.Rd man/NlmeRemoteExecutor-class.Rd man/NlmeVpcParams-class.Rd man/addReset.Rd man/print.NlmePmlModel.Rd man/NlmeErrorModel-class.Rd man/profilePertubate.Rd man/getThetas.Rd man/saveUpdatedMetamodel.Rd man/CovariateEffectModel-class.Rd man/NlmeModelAbsorption-class.Rd man/pkmodel_MappingParameters.Rd man/updateErrorModel.Rd