Man pages for GOxploreR
Structural Exploration of the Gene Ontology (GO) Knowledge Base
| all_terms_level_h2 | Building tree |
| degreeDistBP | Degree distribution of the GO biological process (BP) terms... |
| degreeDistCC | Degree distribution of the GO cellular component (CC) terms... |
| degreeDistMF | Degree distribution of the GO molecular function (MF) terms... |
| distRankingGO | Provides ranking of GO-terms according to distance |
| drawGraph | Visualize GO DAG |
| drawGraph4Vis | Visualize GO DAG |
| edgelistBP | Title |
| edgelistCC | Title |
| edgelistMF | Title |
| Gene2GOTermAndLevel | Get the Gene Ontology (GO) terms associated with a gene(s)... |
| Gene2GOTermAndLevel_ON | Get the Gene Ontology (GO) terms associated with a gene(s)... |
| GetDAG | Organism-specific GO-DAG edgelist |
| getGOcategory | GO-term category getter |
| GetLeafNodesBP | All the BP GO-DAG leaf nodes |
| GetLeafNodesCC | All the CC GO-DAG leaf nodes |
| GetLeafNodesMF | All the MF GO-DAG leaf nodes |
| getNodeTerms | Retrieve GO terms in each category |
| GO2DecBP | GO biological process (BP) descendant GO-terms as an Edgelist |
| GO2DecCC | GO cellular component (CC) descendant GO-terms as an Edgelist |
| GO2DecMF | GO molecular function (MF) descendant GO-terms as an Edgelist |
| GO4Organism | All gene association GO-terms for an organism |
| GOTermBP2ChildLevel | Get the level of a biological process (BP) GO term's children |
| GOTermBPOnLevel | GO biological process (BP) terms level getter |
| GOTermCC2ChildLevel | Get the level of a cellular component (CC) GO term's children |
| GOTermCCOnLevel | GO cellular component (CC) terms level getter |
| GOTermMF2ChildLevel | Get the level of a molecular function (MF) GO term's children |
| GOTermMFOnLevel | GO molecular function (MF) term level getter |
| goterm.org | Title |
| GOTermsApp.B | Building tree one |
| GOTermsApp.C | Title |
| GOTermsApp.M | Title |
| Level2GOTermBP | GO biological process (BP) terms on a level |
| Level2GOTermCC | GO cellular component (CC) terms on a level |
| Level2GOTermMF | GO molecular function (MF) terms on a level |
| Level2JumpNodeBP | Jump nodes from a GO BP level |
| Level2JumpNodeCC | Jump nodes from a GO CC level |
| Level2JumpNodeMF | Jump nodes from a GO MF level |
| Level2LeafNodeBP | GO biological process (BP) level leaf nodes getter |
| Level2LeafNodeCC | GO cellular component (CC) level leaf nodes getter |
| Level2LeafNodeMF | GO molecular function (MF) level leaf nodes getter |
| Level2NoLeafNodeBP | Non-leaf GO-terms on a GO BP level |
| Level2NoLeafNodeCC | Non-leaf GO-terms on a GO CC level |
| Level2NoLeafNodeMF | Non-leaf GO-terms on a GO MF level |
| Level2RegularNodeBP | Regular nodes from a GO BP level |
| Level2RegularNodeCC | Regular nodes from a GO CC level |
| Level2RegularNodeMF | Regular nodes from a GO MF level |
| maxLevelBP | Return length of depth for bp |
| maxLevelCC | Return length of depth for cc |
| maxLevelMF | Return length of depth for mf |
| prioritizedGOTerms | prioritization of a lists of GO-terms |
| scoreRankingGO | Provides ranking of GO-terms according to a score |
| visRDAGBP | Species-specific biological process GO-DAG |
| visRDAGCC | Species-specific cellular component GO-DAG |
| visRDAGMF | Species-specific molecular function GO-DAG |
| visRsubDAGBP | Visualise the GO-DAG for a specific organism based on certain... |
| visRsubDAGCC | Visualise the GO-DAG for a specific organism based on certain... |
| visRsubDAGMF | Visualise the GO-DAG for a specific organism based on certain... |
