Files in WhopGenome
High-Speed Processing of VCF, FASTA and Alignment Data
MD5
DESCRIPTION
NAMESPACE
inst/CITATION
inst/COPYRIGHTS
inst/extdata/ex.vcf.gz
inst/extdata/ex.vcf.gz.tbi
inst/extdata/ex.fasta
inst/extdata/ex.gff3.gz
inst/extdata/ex.vcf
inst/extdata/ex.gff3
inst/extdata/ex.gff3.gz.tbi
inst/extdata/ex.fasta.fai
R/bgzf.R
R/misc.R
R/fai.R
R/x_ucsc.R
R/x_go.R
R/filter.R
R/regions.R
R/x_eg_db.R
R/file.R
R/read_simple.R
R/samples.R
R/tabix.R
R/x_pedigree.R
R/ZZZ_whopgenome.R
src/rdnapp_MAF.h
src/w_vcf.h
src/t_Rifc.cpp
src/t_info.cpp
src/w_samples.cpp
src/w_codemat.cpp
src/dynstorage.h
src/Makevars.win
src/w_vcf.cpp
src/w_tools.cpp
src/functor_common.h
src/w_read.cpp
src/t_read.cpp
src/w_region.cpp
src/rdnapp_MEGA.h
src/w_snpmat_fnc.cpp
src/w_main.cpp
src/w_tabix_internal.h
src/w_dataframe.cpp
src/w_snpmat_diplo.cpp
src/rdnapp_Fasta.h
src/w_tools.h
src/rdnapp_Phylip.h
src/w_common.h
src/t_main.cpp
src/w_snpmat_int.cpp
src/w_rsupport.cpp
src/t_region.cpp
src/WhopGenome-win.def
src/w_filtering.cpp
src/dummy.cc
src/Makevars
src/readdnapp.cpp
src/faidx_ifc.cpp
src/w_rsupport.h
src/w_tabix.h
src/w_snpmat_str.cpp
src/tabix/kseq.h
src/tabix/ksort.h
src/tabix/kstring.c
src/tabix/knetfile.h
src/tabix/razf.h
src/tabix/bedidx.c
src/tabix/tabix.h
src/tabix/bgzf.c
src/tabix/kstring.h
src/tabix/faidx.c
src/tabix/bam_endian.h
src/tabix/faidx.h
src/tabix/index.c
src/tabix/khash.h
src/tabix/bgzf.h
src/tabix/razf.c
src/tabix/knetfile.c
man/whop.eg.toAccnum.Rd
man/vcf_getheaderline.Rd
man/fai_open.Rd
man/tabix_setregion.Rd
man/whop.ped.names.Rd
man/whop.ped.load.Rd
man/whop.eg.goIds.Rd
man/whop.eg.toEnsembl.Rd
man/vcf_getChrom.Rd
man/whop.eg.fromUniprot.Rd
man/whop.ucsc.query.Rd
man/whop.ped.daughtersOf.Rd
man/whop.eg.fromPmid.Rd
man/whop.eg.genename.Rd
man/vcf_buildindex.Rd
man/whop.eg.toAlias.Rd
man/vcf_isINDEL.Rd
man/WhopPkg-package.Rd
man/vcf_restartregion.Rd
man/fai_build.Rd
man/whop.go.term_ancestors.Rd
man/tabix_close.Rd
man/whop.ped.save.Rd
man/vcf_readLineRaw.Rd
man/vcf_reopen.Rd
man/whop.ped.mothers.Rd
man/whop.go.is_obsolete_byid.Rd
man/whop.kegg.pathway_url.Rd
man/whop.eg.fromAlias.Rd
man/whop.eg.eg_lookupAll.Rd
man/whop.eg.fromGO.Rd
man/whop.eg.toEnsemblTrans.Rd
man/vcf_readLineDF.Rd
man/whop.eg.fromOmim.Rd
man/whop.ped.males.Rd
man/vcf_readLineVec.Rd
man/whop.eg.fromAccnum.Rd
man/whop.go.goid_like.Rd
man/whop.eg.fromEnzyme.Rd
man/vcf_getnumcontigs.Rd
man/tabix_build.Rd
man/vcf_addfilter.Rd
man/tabix_read.Rd
man/vcf_selectsamples.Rd
man/whop.eg.fromRefseq.Rd
man/whop.ucsc.geneInfo.Rd
man/vcf_rule.setrefvalues.Rd
man/VCF_snpmat_diplo_bial_geno_filtered.Rd
man/whop.eg.fromEnsemblProt.Rd
man/whop.go.term_ancestors_similar.Rd
man/vcf_countSNPs.Rd
man/whop.eg.eg_lookupSingle.Rd
man/fai_query2.Rd
man/whop.ucsc.genesForRegion.Rd
man/vcf_describefilters.Rd
man/vcf_getcontignames.Rd
man/bgzf_compress.Rd
man/tabix_open.Rd
man/vcf_setregion.Rd
man/tabix_getregion.Rd
man/fai_query4.Rd
man/tabix_reopen.Rd
man/whop.go.terms_match.Rd
man/whop.eg.fromGO2AllEgs.Rd
man/whop.ped.females.Rd
man/vcf_open.Rd
man/whop.ped.familyOf.Rd
man/whop.go.all_genes_for_term.Rd
man/vcf_eor.Rd
man/whop.eg.keggpathways.Rd
man/whop.eg.toPmid.Rd
man/vcf_isSNP.Rd
man/whop.eg.region.Rd
man/whop.go.term_synonyms.Rd
man/whop.ped.entriesOf.Rd
man/vcf_valid.Rd
man/whop.eg.toPath.Rd
man/whop.ped.fromPop.Rd
man/whop.ucsc.geneInfoSimilar.Rd
man/whop.ped.sonsOf.Rd
man/VCF_read_snp_diplo_bial_int_altpresence.Rd
man/whop.eg.fromUnigene.Rd
man/whop.eg.eg_RevLookup.Rd
man/whop.eg.toUniprot.Rd
man/whop.eg.toGO.Rd
man/vcf_parseNextSNP.Rd
man/whop.eg.eg_lookup.Rd
man/vcf_rule.setaction.Rd
man/vcf_getregion.Rd
man/whop.eg.toEnsemblProt.Rd
man/fai_close.Rd
man/vcf_rule.setfield.Rd
man/whop.go.load.Rd
man/whop.go.connect.Rd
man/whop.eg.fromPath.Rd
man/whop.eg.orgdb_loaded.Rd
man/vcf_rule.setcolumn.Rd
man/fai_reopen.Rd
man/whop.eg.toEnzyme.Rd
man/vcf_clearfilters.Rd
man/whop.eg.toUnigene.Rd
man/whop.go.term_children.Rd
man/whop.eg.installdb.Rd
man/whop.ped.siblingsOf.Rd
man/whop.eg.fromEnsembl.Rd
man/whop.eg.chromosome.Rd
man/whop.eg.selectOrganism.Rd
man/tabix_restartregion.Rd
man/whop.eg.load_orgdb.Rd
man/whop.ped.parentsOf.Rd
man/whop.go.is_obsolete_byname.Rd
man/vcf_rule.disable.Rd
man/whop.go.match.Rd
man/whop.eg.Organism.Rd
man/whop.eg.toOmim.Rd
man/whop.eg.toRefseq.Rd
man/whop.ped.fathers.Rd
man/whop.eg.abbrevForOrganism.Rd
man/vcf_getfieldnames.Rd
man/whop.eg.enzyme.Rd
man/vcf_rule.setcomparison.Rd
man/vcf_close.Rd
man/whop.eg.fromEnsemblTrans.Rd
