| aidR-package | aidR: Reading and Standardizing Automated Insulin Delivery... |
| check_completeness | Check if data for different types are available for at least... |
| check_completeness_range | Check if data for different types are available for a range... |
| check_insulin_totals | Check that the summed insulin matches the daily totals... |
| clean | Generic function for cleaning data |
| clean.carelink | Format and clean the CareLink data to keep relevant columns... |
| clean.dexcom_clarity | Format and clean the Dexcom Clarity data to keep relevant... |
| clean.glooko | Format and clean the Glooko data to keep relevant columns... |
| clean.mylife | Format and clean the mylife data to keep relevant columns... |
| clean.tandem_source | Format and clean the Tandem Source data to keep relevant... |
| clean.tidepool | Format and clean the Tidepool data to keep relevant columns... |
| clean.yourloops | Format and clean the YourLoops data to keep relevant columns... |
| dot-aggregate_per_day.aidR | Aggregate a standardized data frame into one value per day |
| dot-carelink_carb_variants.aidR | The carbohydrate column names used in a CareLink export |
| dot-check_completeness_id.aidR | Check if data for different types are available for at least... |
| dot-check_completeness_range_id.aidR | Check if data for different types are available for a range... |
| dot-check_if_missing_columns_with_data.aidR | Check that no relevant columns were missed when splitting a... |
| dot-check_insulin_total.aidR | Compare the summed and the reported daily insulin of one data... |
| dot-check_time_shift.aidR | Warn if the entries of two formats are shifted by one hour |
| dot-clean_carelink_bolus.aidR | Format and clean bolus data from a CareLink export |
| dot-clean_carelink_carbs.aidR | Format and clean carbohydrate data from a CareLink export |
| dot-clean_carelink_CGM.aidR | Format and clean CGM data from a CareLink export |
| dot-clean_carelink_SMBG.aidR | Format and clean SMBG data from a CareLink export |
| dot-clean_mylife_bolus.aidR | Format and clean bolus data from a mylife export |
| dot-clean_mylife_carbs.aidR | Format and clean carbohydrate data from a mylife export |
| dot-clean_mylife_SMBG.aidR | Format and clean SMBG data from a mylife export |
| dot-coerce_to.aidR | Coerce a vector to a target atomic type |
| dot-convert_BG_units_carelink.aidR | Convert blood glucose units to mg/dL in a CareLink file |
| dot-convert_excel_datetime.aidR | Convert timestamps from an Excel file formatted as fractional... |
| dot-convert_excel_serial.aidR | Convert timestamps from an Excel file formatted as serial... |
| dot-convert_timestamp_carelink.aidR | Convert timestamps of a CareLink file to POSIXct timestamps |
| dot-create_link_id.aidR | Create a key linking bolus and carbohydrate entries of the... |
| dot-daily_insulin_totals.aidR | The insulin delivered on one day, for the header of the... |
| dot-detect_csv_separator.aidR | Detect the separator of a CSV file |
| dot-diax_device.aidR | Determine the device name(s) recorded for one data type |
| dot-diax_device_col.aidR | Name of the column holding the device name, per aidR data... |
| dot-diax_list.aidR | Build a full DIAX list for one individual |
| dot-diax_metadata.aidR | Build the 'metadata' section of a DIAX list |
| dot-diax_metadata_time.aidR | Describe the timestamp convention used, for the DIAX metadata |
| dot-diax_series.aidR | Build one DIAX time/value series from a standardized aidR... |
| dot-diax_series_map.aidR | Mapping from aidR data types to DIAX field names |
| dot-diax_value_col.aidR | Name of the column holding the series value, per aidR data... |
| dot-draw_leader_lines.aidR | Draw a leader line from a moved marker to the time it... |
| dot-extract_estimated_absorption_duration_tidepool.aidR | Extract the estimated absorption duration from the Food sheet... |
| dot-extract_net_carbs_tidepool.aidR | Extract the net carbohydrate amount from the 'Nutrition'... |
| dot-filter_cgm.aidR | Filter CGM data |
| dot-filter_near_duplicates.aidR | Remove near-duplicate entries from different formats |
| dot-filter_overwritten_carbs.aidR | Remove carbohydrate entries that were overwritten by another... |
| dot-filter_relevant_files.aidR | Filter a character vector to retain only recognized data file... |
| dot-find_near_duplicates.aidR | Find near-duplicate entries from different formats |
| dot-find_overwritten_carbs.aidR | Find carbohydrate entries that were overwritten by another... |
| dot-find_slow_carbs.aidR | Find series of slowly absorbed carbohydrates that Glooko... |
| dot-format_basal_glooko.aidR | Format and clean basal data from a Glooko export |
| dot-format_basal_tandem_source.aidR | Format and clean basal data from a Tandem Source export |
| dot-format_basal_tidepool.aidR | Format and clean basal data from a Tidepool export |
| dot-format_basal_yourloops.aidR | Format and clean basal data from a YourLoops export |
| dot-format_bg_tandem_source.aidR | Format and clean SMBG data from a Tandem Source export |
| dot-format_bolus_calculator_tidepool.aidR | Format and clean carbohydrate data from the Bolus Calculator... |
| dot-format_bolus_glooko.aidR | Format and clean bolus data from a Glooko export |
| dot-format_bolus_tandem_source.aidR | Format and clean bolus data from a Tandem Source export |
| dot-format_bolus_tidepool.aidR | Format and clean bolus data from a Tidepool export |
| dot-format_bolus_yourloops.aidR | Format and clean bolus data from a YourLoops export |
| dot-format_carbs_glooko.aidR | Format and clean carbohydrate data from a Glooko export |
| dot-format_carbs_tandem_source.aidR | Format and clean carbohydrate data from a Tandem Source... |
| dot-format_carbs_yourloops.aidR | Format and clean carbohydrate data from a YourLoops export |
| dot-format_cgm_dexcom_clarity.aidR | Format and clean CGM data from a Dexcom Clarity export |
| dot-format_cgm_glooko.aidR | Format and clean CGM data from a Glooko export |
| dot-format_cgm_tandem_source.aidR | Format and clean CGM data from a Tandem Source export |
| dot-format_cgm_tidepool.aidR | Format and clean CGM data from a Tidepool export |
| dot-format_cgm_yourloops.aidR | Format and clean CGM data from a YourLoops export |
| dot-format_date_ranges.aidR | Format date ranges |
| dot-format_diax_time.aidR | Format timestamps according to the DIAX ISO 8601 convention |
| dot-format_food_tidepool.aidR | Format and clean carbohydrate data from the Food sheet of a... |
| dot-format_glooko_file.aidR | Format any file from a Glooko export by configuring... |
| dot-format_rescuecarbs_yourloops.aidR | Format and clean rescue carbohydrate data from a YourLoops... |
| dot-format_SMBG_glooko.aidR | Format and clean SMBG data from a Glooko export |
| dot-format_SMBG_tidepool.aidR | Format and clean SMBG data from a Tidepool export |
| dot-format_tandem_source_file.aidR | Format any file from a Tandem Source export by configuring... |
| dot-format_timestamp_yourloops.aidR | Format timestamps to get local (wall-clock) time of a... |
| dot-format_total_basal_glooko.aidR | Total basal insulin per day, as reported by a Glooko export |
| dot-format_total_basal_tandem_source.aidR | Total basal insulin per day, as reported by a Tandem Source... |
| dot-format_total_bolus_glooko.aidR | Total bolus insulin per day, as reported by a Glooko export |
| dot-format_total_insulin_glooko.aidR | Format and clean daily aggregated insulin data from a Glooko... |
| dot-format_units.aidR | Write an amount of insulin for the plot |
| dot-get_all_files_in_path.aidR | Recursively traverse a directory and return all contained... |
| dot-get_carelink_aggr_auto_insulin.aidR | Parse all entries corresponding to the daily aggregated auto... |
| dot-get_carelink_alerts.aidR | Parse all entries corresponding to alerts in a CareLink... |
| dot-get_carelink_bolus.aidR | Parse all entries corresponding to bolus deliveries in a... |
| dot-get_carelink_BWZ.aidR | Parse all entries corresponding to the bolus wizard in a... |
| dot-get_carelink_carb_variant.aidR | Find the carbohydrate columns present in a CareLink export |
| dot-get_carelink_CGM.aidR | Parse all entries corresponding to CGM data in a CareLink... |
| dot-get_carelink_correction_bolus_info.aidR | Parse all entries corresponding to correction boluses in a... |
| dot-get_carelink_device_changes.aidR | Parse all entries corresponding to device changes in a... |
| dot-get_carelink_insulin_action_curve_over_time.aidR | Parse all entries corresponding to insulin action curve over... |
| dot-get_carelink_prime.aidR | Parse all entries corresponding to prime events in a CareLink... |
| dot-get_carelink_scheduled_basal_rates.aidR | Parse all entries corresponding to the scheduled basal rates... |
| dot-get_carelink_sensor_calibration.aidR | Parse all entries corresponding to sensor calibration in a... |
| dot-get_carelink_sensor_exceptions.aidR | Parse all entries corresponding to sensor exceptions in a... |
| dot-get_carelink_SMBG.aidR | Parse all entries corresponding to SMBG in a CareLink export |
| dot-get_carelink_temp_basal.aidR | Parse all entries corresponding to temporary basal rates in a... |
| dot-get_glooko_file_lookup.aidR | A lookup with Glooko file characteristics |
| dot-get_sep_dexcom_clarity.aidR | Find the separator used in a Dexcom Clarity export |
| dot-get_tandem_source_file_lookup.aidR | A lookup with Tandem Source file characteristics |
| dot-get_yourloops_file_lookup.aidR | A lookup with YourLoops file characteristics |
| dot-get_yourloops_file_type.aidR | Get the data type of a file from a YourLoops export |
| dot-harmonise_column_types.aidR | Harmonise column types across a list of data frames |
| dot-id_prefix.aidR | Prefix identifying an individual in a message |
| dot-ids_in_data.aidR | All participant identifiers found in a list of standardized... |
| dot-is_carelink_format.aidR | Check if a file comes from a CareLink export |
| dot-is_dexcom_clarity_format.aidR | Check if a file comes from a Dexcom Clarity export |
| dot-is_glooko_file_type.aidR | Check if a Glooko file corresponds to a particular data type |
| dot-is_glooko_format.aidR | Check if a file comes from a Glooko export |
| dot-is_mylife_format.aidR | Check if a file comes from a mylife export |
| dot-is_numeric_col.aidR | Check if a vector can be converted to numeric values |
| dot-is_tandem_source_file_type.aidR | Check if a Tandem Source file corresponds to a particular... |
| dot-is_tandem_source_format.aidR | Check if a file comes from a Tandem Source export |
| dot-is_tidepool_format.aidR | Check if a file comes from a Tidepool export |
| dot-is_yourloops_format.aidR | Check if a file comes from a YourLoops export |
| dot-link_bolus_carbs_glooko.aidR | Link boluses and carbohydrate entries of a Glooko bolus file |
| dot-link_bolus_carbs_tandem_source.aidR | Link boluses and carbohydrate entries of a Tandem Source... |
| dot-link_bolus_carbs_tidepool.aidR | Link boluses and carbohydrate entries of a Tidepool export |
| dot-log_removed.aidR | Store removed rows with a reason |
| dot-match_types_before_merging.aidR | Match the column types of multiple data frames |
| dot-merge_by_type.aidR | Merge all data available for one individual and one data type |
| dot-merge_per_id.aidR | Merge all data available for one individual, separately per... |
| dot-merge_slow_carbs.aidR | Merge slowly absorbed carbohydrates that Glooko split into... |
| dot-most_general_class.aidR | Determine the most general atomic type among a set of classes |
| dot-open_carelink_file.aidR | Open a CareLink file |
| dot-plot_single_day.aidR | Draw a single day of diabetes data for one individual |
| dot-prep_plot_data.aidR | Select the data of one individual and one day, for plotting |
| dot-process_file.aidR | Read a single file and dispatch it to the matching format |
| dot-read_carelink_raw.aidR | Read the raw content of a CareLink file, split into its... |
| dot-read_dexcom_clarity_files.aidR | Read a file from a Dexcom Clarity export |
| dot-read_glooko_file.aidR | Read the data from a Glooko file |
| dot-read_tandem_source_file.aidR | Read the data from a Tandem file |
| dot-read_tidepool_sheet.aidR | Read a sheet from a Tidepool Excel file |
| dot-read_yourloops_files.aidR | Read a file from a YourLoops export |
| dot-rename_bolus_tandem_source.aidR | Rename bolus data from a Tandem Source export for easier... |
| dot-sort_by_time.aidR | Sort data frames of all data types according to timestamps |
| dot-spread_markers.aidR | Move markers apart until they no longer overlap |
| dot-subset_by_id.aidR | Keep the rows of one individual only, across all data types |
| dot-sum_or_na.aidR | Sum a vector, ignoring missing values |
| dot-total_basal_per_day.aidR | Total basal insulin delivered per day, summed over the... |
| dot-total_bolus_per_day.aidR | Total bolus insulin delivered per day, summed over the... |
| filter_carbs | Filter carbohydrate entries |
| filter_CGM | Filter CGM values |
| get_cgmquantify_format | Convert CGM data to a format compatible with the R-package... |
| get_iglu_format | Convert CGM data to a format compatible with the R-package... |
| merge_all | Merge data available for all individuals, separately per data... |
| parse_data | Parse data files for a given participant ID |
| plot_day | Plot one or more days of diabetes data for a single subject |
| read_carelink | Read a file from a CareLink export |
| read_dexcom_clarity | Read a file from a Dexcom clarity export |
| read_glooko | Read a file from a Glooko export |
| read_mylife | Read a file from a mylife export |
| read_tandem_source | Read a file from a Tandem Source export |
| read_tidepool | Read a file from a Tidepool export |
| read_yourloops | Read a file from a YourLoops export |
| removed_entries | Get all entries removed during cleaning and filtering |
| write_DIAX_format | Write AID data (CGM, basal, bolus, carbs and SMBG, where... |
