Files in biogram

N-Gram Analysis of Biological Sequences

README.md R/ngrams.R R/indices_and_positions.R R/create_encoding.R R/generate_encodings_dist_1.r R/add_remove_ngrams.R R/calc_ed.R R/calc_si.R R/count_specified.R R/data_manipulation.R R/feature_test_class.R R/criterion_distribution.R R/chi_square.R R/information_gain.R R/kl_divergence.R R/read_fasta.R R/is_ngram.R R/position_ngrams.R R/construct_ngrams.R R/distr_crit.R R/utilities.R R/seq2matrix.R R/aaprop.R R/cluster_reg_exp.R R/count_multigrams.R R/test_features.R R/criterions.R R/degenerate.R R/write_enc.R R/human_cleave.R R/generate_sequence.R R/biogram.R R/ngram_coding.R R/table_ngrams.R R/simplify.R R/count_ngrams.R R/regenerate.R R/region.R vignettes/overview.Rmd man/human_cleave.Rd man/generate_sequence.Rd man/calc_cs.Rd man/seq2ngrams.Rd man/calc_si.Rd man/construct_ngrams.Rd man/calc_criterion.Rd man/degenerate_ngrams.Rd man/validate_encoding.Rd man/decode_ngrams.Rd man/count_total.Rd man/generate_single_unigram.Rd man/print.feature_test.Rd man/test_features.Rd man/code_ngrams.Rd man/aaprop.Rd man/count_ngrams.Rd man/get_ngrams_ind.Rd man/feature_test.Rd man/count_multigrams.Rd man/criterion_distribution.Rd man/calc_ed.Rd man/cut.feature_test.Rd man/count_specified.Rd man/plot.criterion_distribution.Rd man/fast_crosstable.Rd man/as.data.frame.feature_test.Rd man/table_ngrams.Rd man/cluster_reg_exp.Rd man/write_encoding.Rd man/regional_param.Rd man/generate_unigrams.Rd man/list2matrix.Rd man/encoding2df.Rd man/add_1grams.Rd man/degenerate.Rd man/create_encoding.Rd man/l2n.Rd man/check_criterion.Rd man/create_feature_target.Rd man/simple2full.Rd man/create_ngrams.Rd man/read_fasta.Rd man/full2simple.Rd man/summary.feature_test.Rd man/calc_ig.Rd man/calc_pi.Rd man/biogram-package.Rd man/ngrams2df.Rd man/regenerate.Rd man/distr_crit.Rd man/binarize.Rd man/write_fasta.Rd man/calc_kl.Rd man/n2l.Rd man/is_ngram.Rd man/position_ngrams.Rd man/gap_ngrams.Rd man/generate_single_region.Rd tests/test-all.R tests/testthat/test_position_ngrams.R tests/testthat/test_seq2grams.R tests/testthat/test_get_ngrams_pos.R tests/testthat/test_generate_encodings_dist_1.r tests/testthat/test_create_ngrams.R tests/testthat/test_count_ngrams.R tests/testthat/test_quipt_consistency.R tests/testthat/test_is_ngram.R tests/testthat/test_crosstable.R tests/testthat/test_table_ngrams.R tests/testthat/test_calc_ed.R inst/doc/overview.Rmd inst/doc/overview.R