Files in AstroPathJHU/mIFTO

mIFTO: Multiplex Immunoflourescence Titration Optimization

R/FOP.R R/FOP.another.ab.modal.R R/FOP.another.ab.modal.input.R R/FOP.cleaned.file.list.R R/FOP.error.check.R R/FOP.export.data.R R/FOP.findpos.R R/FOP.pixelbypixel.R R/FOP.runforpos.R R/FOP.server.side.R R/FOP.set.ui.R R/FOPdebug.R R/mIFTO.BoxPlot.Calculations.R R/mIFTO.CellbyCell.ByImage.R R/mIFTO.CellbyCell.BySlide.R R/mIFTO.Histogram.Calculations.R R/mIFTO.IC.Plots.Calculations.R R/mIFTO.SN.Ratio.Calculations.R R/mIFTO.Welch.t.test.R R/mIFTO.check.vars.R R/mIFTO.check.varsdebug.R R/mIFTO.create.dir.R R/mIFTO.create.histo.R R/mIFTO.create.my.theme.R R/mIFTO.createBPDataCellbyCell.R R/mIFTO.createBoxplot.R R/mIFTO.decile.define.image.positivity.R R/mIFTO.define.image.positivity.R R/mIFTO.doupdate.pgbar.R R/mIFTO.error.check.R R/mIFTO.fraction.pos.R R/mIFTO.generate.pxp.image.data.R R/mIFTO.ihc.generate.pxp.image.data.R R/mIFTO.ihc.parallel.invoke.gpxp.R R/mIFTO.m.grid.arrange.R R/mIFTO.m.validation.R R/mIFTO.map.and.plot.decile.graphs.R R/mIFTO.map.and.plot.threshold.graphs.R R/mIFTO.map.and.write.histograms.R R/mIFTO.map.boxplots.plots.R R/mIFTO.map.ihc.comp.plots.R R/mIFTO.map.snratio.plots.R R/mIFTO.map.ttest.plots.R R/mIFTO.parallel.invoke.gpxp.R R/mIFTO.pixelbypixel.R R/mIFTO.pixelbypixeldebug.R R/mIFTO.populate.tables.R R/mIFTO.preallocate.tables.R R/mIFTO.server.side.R R/mIFTO.server.sidedebug.R R/mIFTO.sn.ratio.theme.R R/mIFTO.thresholding.Noise.R R/mIFTO.thresholding.Signal.R R/mIFTO.thresholding.means.R R/mIFTO.thresholding.medians.R R/mIFTO.tiff.list.R R/mIFTO.ui.formats.R R/mIFTO.ui.map.R R/mIFTO.welch.t.test.calculations.R R/mIFTO.write.fracs.R R/mIFTO.write.hist.data.R R/mIFTOapp.R R/mIFTOappDebug.R README.md docs/workflow.md man/BoxPlot.Calculations.Rd man/CellbyCell.ByImage.Rd man/CellbyCell.BySlide.Rd man/FOP.Rd man/Histogram.Calculations.Rd man/IC.Plots.Calculations.Rd man/PixelbyPixel.Rd man/SN.Ratio.Calculations.Rd man/Welch.t.test.Rd man/check.vars.Rd man/create.dir.Rd man/create.histo.Rd man/create.my.theme.Rd man/decile.define.image.positivity.Rd man/define.image.positivity.Rd man/doupdate.pgbar.Rd man/fraction.pos.Rd man/generate.pxp.image.data.Rd man/ihc.generate.pxp.image.data.Rd man/ihc.parallel.invoke.gpxp.Rd man/m.grid.arrange.Rd man/m.validation.Rd man/mIFTOapp.Rd man/map.and.plot.decile.graphs.Rd man/map.and.plot.threshold.graphs.Rd man/map.and.write.histograms.Rd man/map.boxplots.plots.Rd man/map.ihc.comp.plots.Rd man/map.snratio.plots.Rd man/map.ttest.plots.Rd man/parallel.invoke.gpxp.Rd man/populate.tables.Rd man/preallocate.tables.Rd man/server.side.Rd man/sn.ratio.theme.Rd man/thresholding.Noise.Rd man/thresholding.Signal.Rd man/thresholding.means.Rd man/thresholding.medians.Rd man/tiff.list.Rd man/ui.formats.Rd man/ui.map.Rd man/welch.t.test.calculations.Rd man/write.fracs.Rd man/write.hist.data.Rd tests/testthat/test_FOP.R tests/testthat/test_FOP.export.data.R tests/testthat/test_FOP.pixelbypixel.R tests/testthat/test_FOP.server.side.R tests/testthat/test_FOP.set.ui.R