map.and.plot.decile.graphs: Used by PxP script to write out the decile type graphs

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Used by PxP script to write out the decile type graphs

Description

Created By: Benjamin Green Last Edited 07/30/2020

Usage

map.and.plot.decile.graphs(
  wd,
  Antibody_Opal,
  Antibody,
  Slide_Descript,
  Concentration,
  Tables,
  theme1,
  con_type,
  colors,
  Antibody_Opal.snratio,
  Antibody_Opal.ttest,
  pb.Object
)

Arguments

wd	the main data root directory
Antibody_Opal	the paired string for an antibody opal pair, designated as "AB (Opal NNN)"
Antibody	the string for an antibody
Concentration	a numeric vector of concentrations used in the titration
Tables	the table of statistics gathered by PxP
theme1	graphing theme
con_type	the type of concentration vector to use factor or numeric
colors	the color vectors for the t test and histograms
Antibody_Opal.snratio	Antibody Opal string for sn ratio graphs
Antibody_Opal.ttest	Antibody Opal string for ttest graphs
pb.Object	progress bar object
Slide_Desctipt	a unique identifier for each slide to be analyzed

Details

Designed to write out the fraction of positivity data for the PxP script

It is meant to be run through the PixelbyPixel function

Value

exports the fraction spreadsheets

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.