map.and.write.histograms: Used by PxP script to plot out the histograms

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Used by PxP script to plot out the histograms

Description

Created By: Benjamin Green, Charles Roberts Last Edited 05/21/2020

Usage

map.and.write.histograms(
  wd,
  Antibody_Opal,
  Slide_Descript,
  Concentration,
  Thresholds,
  table_in,
  theme1,
  colors
)

Arguments

wd	the main data root directory
Antibody_Opal	the paired string for an antibody opal pair, designated as "AB (Opal NNN)"
Concentration	a numeric vector of concentrations used in the titration
Thresholds	The given threshold vector
table_in	the table of statistics gathered by PxP
theme1	the theme for the graphs
colors	the color vectors for the t test and histograms
Slide_Desctipt	a unique identifier for each slide to be analyzed

Details

Designed to output the histogram plots and data

It is meant to be run through the PixelbyPixel function

Value

exports various data and histogram plots

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.