BoxPlot.Calculations: Used by analysis funtions to do the calulations for the...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

BoxPlot.Calculations

R Documentation

Used by analysis funtions to do the calulations for the boxplot graphs

Description

BoxPlot.Calculations Created By: Benjamin Green Last Edited 11/12/2018

Usage

BoxPlot.Calculations(
  f,
  Antibody,
  data.in,
  Opal1,
  Concentration,
  Thresholds,
  x,
  y
)

Arguments

`f`	is the number of tiles to use when making boxplots
`Antibody`	is the name of the antibody which the boxplot data is being created for
`data.in`	is a data.frame column of intensity values for the desired Opal
`Opal1`	is the Opal of interest (ie 540)
`Concentration`	is a numeric list of the denominator of all concentration ratios which a boxplot will be created for (ie 25, 50, 100)
`Thresholds`	is a list of the thresholds at each concentration (ie 5,4,3)
`x`	is the Slide Indicator (ie Tonsil2)
`y`	is the current concentration a boxplot is being made for

Details

This script is desgined to do generate quartiles and fence measurements for creation of boxplots of decile, thresholded, and all data given IF pixel data