map.snratio.plots: Used by PxP script to plot out the snratio plots

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Used by PxP script to plot out the snratio plots

Description

Created By: Benjamin Green, Charles Roberts Last Edited 05/21/2020

Usage

map.snratio.plots(
  wd,
  Antibody_Opal,
  Slide_Descript,
  Concentration,
  tables_in,
  Antibody_Opal.2,
  theme1,
  con_type,
  m.opt
)

Arguments

wd	the main data root directory
Antibody_Opal	the paired string for an antibody opal pair, designated as "AB (Opal NNN)"
Concentration	a numeric vector of concentrations used in the titration
theme1	the theme for the graphs
con_type	the type of concentration vector to use factor or numeric
m.opt	option of whether to use decile type tables or threshold
Slide_Desctipt	a unique identifier for each slide to be analyzed
Tables	the table of statistics gathered by PxP

Details

Designed to output the sn ratio plots as a ggplot object for the PxP script

It is meant to be run through the PixelbyPixel function

Value

exports a ggplot object to be printed for viewing

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.