Histogram.Calculations: Used by analysis funtions to do the calculations for the...

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Used by analysis funtions to do the calculations for the histogram graphs

Description

Histogram.Calculations Created By: Benjamin Green, Charles Roberts Last Edited 11/12/2018

Usage

histogram.calculations(data.in, Concentration, x, q)

Arguments

data.in	is the image of interest
Concentration	is a numeric vector of the denominator of all concentration ratios which a boxplot will be created for (ie 25, 50, 100)
x	is the slide id
q	is the image id

Details

Takes in the data and some constants from the PixelbyPixel script and returns a list with two data.frames one for a histogram of the log(x+1) of the data and one for a histogram of log(x+.001) of the data data.in is an col data.frame; Concentration: [25,50,100]; Opal1 540; Thresholds: [2,5,8]; to run for Tonsil2, 1to25 with threshold of 2 –> x: Tonsil2; y: 1

Value

a list with two data.frames; one with a histogram for shift factor of log(x+1) and one with a shift factor of log(x+.001) the data.frames hold four columns three for the create.hist output and one for the concentration of interest

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.