IC.Plots.Calculations: Usedby analysis functions for violin plot calculations

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Usedby analysis functions for violin plot calculations

Description

IC.Plots.Calculations Created By: Benjamin Green, Charles Roberts Last Edited 11/12/2018

Usage

ic.plots.calculations(All.Images, Opal1, Concentration, x, y, m.opt)

Arguments

All.Images	the full image vector of a case
Opal1	is the Opal of interest (ie 540)
Concentration	is a numeric vector of the denominator of all concentration ratios which a boxplot will be created for (ie 25, 50, 100)
x	is the Slide Indicator (ie Tonsil2)
y	is the numeric value of the current concentration
m.opt	optionally export the percentile boxplots between 10 always export the signal and noise boxplots

Details

This function is desgined to do generate quartiles and fence measurements for creation of boxplots of decile, thresholded, and all data given IF pixel data; the function; is also designed to return boxplots of the selected data

Value

explots a data.frame with the columns: Median, 1st (corresponds to 25th), 2nd (corresponds to 75th), top.inner.fence, bottom.inner.fence

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.