map.ihc.comp.plots: Used by PxP script to write out the fraction of positivity...

In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

Used by PxP script to write out the fraction of positivity graphs

Description

Created By: Benjamin Green Last Edited 07/30/2020

Usage

map.ihc.comp.plots(
  wd,
  Antibody_Opal,
  Slide_Descript,
  Concentration,
  tbl.long,
  theme1
)

Arguments

wd	the main data root directory
Antibody_Opal	the paired string for an antibody opal pair, designated as "AB (Opal NNN)"
Concentration	a numeric vector of concentrations used in the titration
tbl.long	the long type version of the fractions table
theme1	graphing theme
Slide_Desctipt	a unique identifier for each slide to be analyzed

Details

Designed to write out the fraction of positivity graph for comparing different dilutions to IHC

It is meant to be run through the PixelbyPixel function

Value

exports the fraction spreadsheets

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.