preallocate.tables: Preallocate the tables for the results values; Created By:...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

preallocate.tables

R Documentation

Preallocate the tables for the results values; Created By: Benjamin Green; Last Edited 09/25/2019

Description

Preallocate the tables for the results values. All graphs will be generated based off of values stored in the Tables list and all ImageIDs (x and y coordinates) will be added to the Image.IDs list later. This function prepopulates both of these tables with separate subvectors for each concentration - slide pair

Usage

preallocate.tables(
  Slide_Descript,
  Concentration,
  titration.type.name,
  table.names,
  paths,
  Protocol,
  decile.logical,
  threshold.logical
)

Arguments

`Concentration`	a numeric vector of concentrations used in the titration
`titration.type.name`	the titration type for a given dilution set (Primary or TSA)
`table.names`	the table names for whole slide names
`paths`	the data paths, one data path for each concentration
`Protocol`	the protocol type (7color or 9color)
`decile.logical`	whether or not to run a decile approach analysis
`threshold.logical`	whether or not to run a threshold approach analysis
`Slide_Desctipt`	a unique identifier for each slide to be analyzed