welch.t.test.calculations: Used by analysis functions to do the T-Test calculations
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

welch.t.test.calculations

R Documentation

Used by analysis functions to do the T-Test calculations

Description

T.Test.Calculations; Created By: Benjamin Green; Last Edited 09/27/2019

Usage

welch.t.test.calculations(positivity.data, Concentration, x, q)

Arguments

`positivity.data`	a list of four images, positive, negative values then positive, negative binary image masks
`Concentration`	is a numeric vector of the denominator of all concentration ratios which a boxplot will be created for (ie 25, 50, 100)
`x`	is the slide ID
`q`	is image id

Details

Takes in the data and some constants from the PixelbyPixel script and returns a T test for postive and negative Signal defined by the threshold

Value

a list with two data.frames; one with a t test for shift factor of log(x+1) and one with a shift factor of log(x+.001) the data.frames hold two columns one for the t test value and one for the concentration of interest

AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.