CellbyCell.ByImage: Used by RUN.ByImage to do Cell by Cell Analysis on individual...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization
CellbyCell.ByImage R Documentation
Used by RUN.ByImage to do Cell by Cell Analysis on individual images for IF titrations
Description
CellbyCell.ByImage
Created By: Benjamin Green, Charles Roberts
Last Edited 11/12/2018
Usage
CellbyCell.ByImage(out, pb)
Arguments
out
is the list of vairables given by the GUI function
pb
is the progress bar created by the GUI
Details
This function is desgined to do analysis for IF titration series in cell by cell data
providing output for each IMAGE individually grouped by concentration;
it is meant to be run through the RUN.ByImage function
decile data will always be outputed; (or 1/100th depending if
'sparse' option is choose in the GUI) if phenotype information is
filled out in the GUI; phenotype analysis will be run
Value
exports a variety of graphs displayed in the documentation
Such as SNRatio graphs, Stain Index, and Seperation Index, t statisitics and graphs,
histograms of the log intensity profiles, boxplots of the profiles
for images, positivity measures given thresholds
AstroPathJHU/mIFTO documentation built on April 14, 2025, 7:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| CellbyCell.ByImage | R Documentation |
Used by RUN.ByImage to do Cell by Cell Analysis on individual images for IF titrations
Description
CellbyCell.ByImage Created By: Benjamin Green, Charles Roberts Last Edited 11/12/2018
Usage
CellbyCell.ByImage(out, pb)
Arguments
out |
is the list of vairables given by the GUI function |
pb |
is the progress bar created by the GUI |
Details
This function is desgined to do analysis for IF titration series in cell by cell data providing output for each IMAGE individually grouped by concentration;
it is meant to be run through the RUN.ByImage function
decile data will always be outputed; (or 1/100th depending if 'sparse' option is choose in the GUI) if phenotype information is filled out in the GUI; phenotype analysis will be run
Value
exports a variety of graphs displayed in the documentation Such as SNRatio graphs, Stain Index, and Seperation Index, t statisitics and graphs, histograms of the log intensity profiles, boxplots of the profiles for images, positivity measures given thresholds
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.