parallel.invoke.gpxp: Used to loop through each image, call the gen func in...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

parallel.invoke.gpxp

R Documentation

Used to loop through each image, call the gen func in parallel and return Created By: Benjamin Green; Last Edited 09/25/2019

Description

This function is desgined launch the parallelization of the gpxp function in the mIFTO code. It is used to create a local environment with only necessary data for the cluster objects.

Usage

parallel.invoke.gpxp(
  Concentration,
  x,
  y,
  Image.IDs,
  Antibody_Opal,
  titration.type.name,
  Thresholds,
  paths,
  connected.pixels,
  flowout,
  Opal1,
  decile.logical,
  threshold.logical,
  cl
)

Arguments

`Concentration`	a numeric vector of concentrations used in the titration
`x`	a unique identifier for the slide to be analyzed
`y`	the numeric of which index from the concentration vector to use
`Image.IDs`	the image coordinates of the current image as a comma separated pair
`Antibody_Opal`	the paired string for an antibody opal pair, designated as "AB (Opal NNN)"
`titration.type.name`	the type of titration that was performed (TSA or Primary)
`Thresholds`	a list of thresholds used for each concentration and slide
`paths`	the paths to the data as a list, with an element for each concentration
`connected.pixels`	the number of pixels that a pixel must be connected to for positivity measures
`flowout`	logical for whether or not flow like results will be produced
`Opal1`	the opal value of interest
`decile.logical`	whether or not to run a decile approach analysis
`threshold.logical`	whether or not to run a threshold approach analysis
`cl`	cluster object