ihc.generate.pxp.image.data: Used to create the pixel-by-pixel graph data and return a...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

ihc.generate.pxp.image.data

R Documentation

Used to create the pixel-by-pixel graph data and return a table for ihc; Created By: Benjamin Green; Last Edited 09/25/2019

Description

This function is desgined to do analysis for the ihc in an IF titration series in Pixel by Pixel data provding output for each IMAGE individually grouped by Concentration

Usage

ihc.generate.pxp.image.data(
  ihc.path,
  x,
  ihc.Thresholds,
  ihc.connected.pixels,
  z
)

Arguments

`ihc.path`	the paths to the data as a list, with an element for each concentration
`x`	a unique identifier for the slide to be analyzed
`ihc.Thresholds`	a list of thresholds used for each concentration and slide
`ihc.connected.pixels`	the number of pixels that a pixel must be connected to for positivity measures
`z`	The current image ID