ihc.parallel.invoke.gpxp: Used to loop through each image, call the gen func in...
In AstroPathJHU/mIFTO: mIFTO: Multiplex Immunoflourescence Titration Optimization

ihc.parallel.invoke.gpxp

R Documentation

Used to loop through each image, call the gen func in parallel and return for IHC Created By: Benjamin Green; Last Edited 09/25/2019

Description

This function is desgined launch the parallelization of the ihc.gpxp function in the mIFTO code. It is used to create a local environment with only necessary data for the cluster objects.

Usage

ihc.parallel.invoke.gpxp(
  ihc.path,
  x,
  ihc.Image.IDs,
  ihc.Thresholds,
  ihc.connected.pixels,
  cl
)

Arguments

`ihc.path`	the paths to the data as a list, with an element for each concentration
`x`	a unique identifier for the slide to be analyzed
`ihc.Image.IDs`	the image coordinates of the current image as a comma separated pair
`ihc.Thresholds`	a list of thresholds used for each concentration and slide
`ihc.connected.pixels`	the number of pixels that a pixel must be connected to for positivity measures
`cl`	cluster object