cyto_clean: Apply flowAI anomaly detection to clean cytometry data

Description Usage Arguments Author(s) References See Also Examples

View source: R/cyto-helpers.R

Description

Apply flowAI anomaly detection to clean cytometry data

Usage

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Arguments

x

object of class flowFrame, flowSet, GatingHierarchy or GatingSet. The root node extracted when a GatingSet or GatingHierachy is supplied.

...

additional arguments passed to flow_auto_qc.

Author(s)

Dillon Hammill, Dillon.Hammill@anu.edu.au

References

Monaco,G. et al. (2016) flowAI: automatic and interactive anomaly discerning tools for flow cytometry data. Bioinformatics. 2016 Aug 15;32(16):2473-80. https://academic.oup.com/bioinformatics/article/32/16/2473/2240408

See Also

flow_auto_qc

Examples

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library(CytoExploreRData)

# Activation flowSet
fs <- Activation

# Clean Activation flowSet
fs <- cyto_clean(fs)

# Activation GatingSet
gs <- GatingSet(fs)

# Clean Activation GatingSet
gs <- cyto_clean(gs)

DillonHammill/CytoExploreR documentation built on July 9, 2020, 1:53 a.m.