cyto_merge_by | R Documentation |
cyto_merge_by
makes a call to cyto_group_by
to split samples
into groups based on experiment variables. The resulting groups are then
converted to flowFrames using cyto_convert
. cyto_merge_by
is
the preferred way to merge samples in CytoExploreR as it will ensure
appropriate sampling in cyto_plot
.
## S3 method for class 'GatingSet'
cyto_merge_by(
x,
parent = "root",
merge_by = "all",
select = NULL,
barcode = TRUE,
...
)
## S3 method for class 'flowSet'
cyto_merge_by(x, merge_by = "all", select = NULL, barcode = TRUE, ...)
x |
object of class |
parent |
name of the parent population to merge when a |
merge_by |
vector of |
select |
selection critieria passed to |
barcode |
logical indicating whether a call should be made to
|
... |
additional arguments passed to |
list of flowFrames merged by the grouping variables specified by
merge_by
.
Dillon Hammill, Dillon.Hammill@anu.edu.au
cyto_group_by
cyto_select
cyto_barcode
cyto_sample
# Load CytoExploreRData to access data
library(CytoExploreRData)
# Activation flowSet
fs <- Activation
# Activation GatingSet
gs <- GatingSet(fs)
# Experiment details
cyto_details(fs)
# Merge samples by 'Treatment'
fr_list <- cyto_merge_by(fs, "Treatment")
# Merge samples by 'OVAConc'
fr_list <- cyto_merge_by(fs, "OVAConc")
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