DillonHammill/CytoExploreR
Interactive Analysis of Cytometry Data

Package index
Search the DillonHammill/CytoExploreR package
Vignettes
Functions
524
Source code
56
Man pages
100
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DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data
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API

API for DillonHammill/CytoExploreR
Interactive Analysis of Cytometry Data

Global functions
.all_na Source code
.args_list Source code
.args_update Source code
.boxed.labels Source code
.cyto_CV Source code
.cyto_alias Source code
.cyto_calibrate_recall Source code
.cyto_count Source code
.cyto_density Source code
.cyto_density.flowFrame Source code
.cyto_density.list Source code
.cyto_density_range Source code
.cyto_freq Source code
.cyto_gate_boundary_draw Source code
.cyto_gate_center Source code
.cyto_gate_center.ellipsoidGate Source code
.cyto_gate_center.filters Source code
.cyto_gate_center.list Source code
.cyto_gate_center.polygonGate Source code
.cyto_gate_center.quadGate Source code
.cyto_gate_center.rectangleGate Source code
.cyto_gate_coords Source code
.cyto_gate_count Source code
.cyto_gate_draw Source code
.cyto_gate_ellipse_draw Source code
.cyto_gate_interval_draw Source code
.cyto_gate_manual Source code
.cyto_gate_polygon_draw Source code
.cyto_gate_quad_convert Source code
.cyto_gate_quadrant_draw Source code
.cyto_gate_rectangle_draw Source code
.cyto_gate_threshold_draw Source code
.cyto_gate_type Source code
.cyto_gate_web_draw Source code
.cyto_gatingTemplate_check Source code
.cyto_geometric_mean Source code
.cyto_label_coords Source code
.cyto_label_dims Source code
.cyto_label_overlap Source code
.cyto_label_pops Source code
.cyto_label_stat Source code
.cyto_label_text Source code
.cyto_map Source code
.cyto_mean Source code
.cyto_median Source code
.cyto_median_tracker Source code
.cyto_mode Source code
.cyto_nodes_split Source code
.cyto_plot_args_split Source code
.cyto_plot_axes_label Source code
.cyto_plot_axes_labels Source code
.cyto_plot_axes_text Source code
.cyto_plot_colour_palette Source code
.cyto_plot_density Source code
.cyto_plot_density_fill Source code
.cyto_plot_empty Source code
.cyto_plot_gate Source code
.cyto_plot_label Source code
.cyto_plot_layout Source code
.cyto_plot_legend Source code
.cyto_plot_margins Source code
.cyto_plot_point Source code
.cyto_plot_point_col Source code
.cyto_plot_point_col_scale Source code
.cyto_plot_theme_inherit Source code
.cyto_plot_title Source code
.cyto_quantile Source code
.cyto_range Source code
.cyto_spillover_pops Source code
.cyto_stat_check Source code
.cyto_stat_name Source code
.cyto_transformer_complete Source code
.cyto_transformer_complete.GatingHierarchy Source code
.cyto_transformer_complete.GatingSet Source code
.cyto_transformer_complete.flowFrame Source code
.cyto_transformer_complete.flowSet Source code
.empty Source code
.multi_gate_types Source code
.onLoad Source code
.par Source code
.pp_cyto_gate_draw Source code
.round Source code
.split_gate_types Source code
.spread.labels Source code
.suppress_all_messages Source code
LAPPLY Source code
SysExec Source code
cyto_apply Man page Source code
cyto_barcode Man page Source code
cyto_beads_sample Man page Source code
cyto_calibrate Man page Source code
cyto_calibrate_reset Man page Source code
cyto_channel_match Man page Source code
cyto_channel_select Man page Source code
cyto_channels Man page Source code
cyto_channels_extract Man page Source code
cyto_channels_restrict Man page Source code
cyto_channels_restrict.GatingSet Man page Source code
cyto_channels_restrict.flowFrame Man page Source code
cyto_channels_restrict.flowSet Man page Source code
cyto_check Man page Source code
cyto_clean Man page Source code
cyto_compensate Man page Source code
cyto_compensate.GatingSet Man page Source code
cyto_compensate.flowFrame Man page Source code
cyto_compensate.flowSet Man page Source code
cyto_convert Man page Source code
cyto_convert.GatingHierarchy Man page Source code
cyto_convert.GatingSet Man page Source code
cyto_convert.flowFrame Man page Source code
cyto_convert.flowSet Man page Source code
cyto_copy Man page Source code
cyto_details Man page Source code
cyto_details_edit Man page Source code
cyto_details_save Man page Source code
cyto_empty Man page Source code
cyto_export Man page Source code
cyto_extract Man page Source code
cyto_filter Man page Source code
cyto_fluor_channels Man page Source code
cyto_gate_bool Man page Source code
cyto_gate_convert Man page Source code
cyto_gate_convert.default Source code
cyto_gate_convert.ellipsoidGate Man page Source code
cyto_gate_convert.filters Man page Source code
cyto_gate_convert.list Man page Source code
cyto_gate_convert.polygonGate Man page Source code
cyto_gate_convert.quadGate Man page Source code
cyto_gate_convert.rectangleGate Man page Source code
cyto_gate_copy Man page Source code
cyto_gate_draw Man page Source code
cyto_gate_draw.GatingSet Man page Source code
cyto_gate_draw.flowFrame Man page Source code
cyto_gate_draw.flowSet Man page Source code
cyto_gate_edit Man page Source code
cyto_gate_extract Man page Source code
cyto_gate_prepare Man page Source code
cyto_gate_remove Man page Source code
cyto_gate_rename Man page Source code
cyto_gate_transform Man page Source code
cyto_gate_transform.ellipsoidGate Man page Source code
cyto_gate_transform.filters Man page Source code
cyto_gate_transform.list Man page Source code
cyto_gate_transform.polygonGate Man page Source code
cyto_gate_transform.quadGate Man page Source code
cyto_gate_transform.rectangleGate Man page Source code
cyto_gate_type Man page Source code
cyto_gatingTemplate_active Man page Source code
cyto_gatingTemplate_apply Man page Source code
cyto_gatingTemplate_create Man page Source code
cyto_gatingTemplate_edit Man page Source code
cyto_gatingTemplate_generate Man page Source code
cyto_gatingTemplate_generate.GatingHierarchy Man page Source code
cyto_gatingTemplate_generate.GatingSet Man page Source code
cyto_gatingTemplate_read Man page Source code
cyto_gatingTemplate_select Man page Source code
cyto_gatingTemplate_update Man page Source code
cyto_gatingTemplate_write Man page Source code
cyto_group_by Man page Source code
cyto_import Source code
cyto_load Man page Source code
cyto_map Man page Source code
cyto_map.GatingSet Man page Source code
cyto_map.flowFrame Man page Source code
cyto_map.flowSet Man page Source code
cyto_markers Man page Source code
cyto_markers.GatingHierarchy Man page Source code
cyto_markers.GatingSet Man page Source code
cyto_markers.flowFrame Man page Source code
cyto_markers.flowSet Man page Source code
cyto_markers_edit Man page Source code
cyto_markers_extract Man page Source code
cyto_merge_by Man page Source code
cyto_merge_by.GatingSet Man page Source code
cyto_merge_by.flowSet Man page Source code
cyto_names Man page Source code
cyto_names.GatingHierarchy Man page Source code
cyto_names.GatingSet Man page Source code
cyto_names.flowFrame Man page Source code
cyto_names.flowSet Man page Source code
cyto_names.list Man page Source code
cyto_names<- Man page
cyto_names_parse Man page Source code
cyto_nodes Man page Source code
cyto_nodes_ancestor Man page Source code
cyto_nodes_convert Man page Source code
cyto_plot Man page Source code
cyto_plot.GatingHierarchy Man page Source code
cyto_plot.GatingSet Man page Source code
cyto_plot.flowFrame Man page Source code
cyto_plot.flowSet Man page Source code
cyto_plot_compensation Man page Source code
cyto_plot_compensation.GatingHierarchy Man page Source code
cyto_plot_compensation.GatingSet Man page Source code
cyto_plot_compensation.flowFrame Man page Source code
cyto_plot_compensation.flowSet Man page Source code
cyto_plot_complete Man page Source code
cyto_plot_contour Man page Source code
cyto_plot_contour.flowFrame Man page Source code
cyto_plot_contour.flowSet Man page Source code
cyto_plot_contour.list Man page Source code
cyto_plot_custom Man page Source code
cyto_plot_density Man page Source code
cyto_plot_density.flowFrame Man page Source code
cyto_plot_density.list Man page Source code
cyto_plot_empty Man page Source code
cyto_plot_empty.flowFrame Man page Source code
cyto_plot_empty.list Source code
cyto_plot_explore Man page Source code
cyto_plot_explore.GatingHierarchy Man page Source code
cyto_plot_explore.GatingSet Man page Source code
cyto_plot_explore.flowFrame Man page Source code
cyto_plot_explore.flowSet Man page Source code
cyto_plot_gate Man page Source code
cyto_plot_gate.default Man page Source code
cyto_plot_gate.ellipsoidGate Man page Source code
cyto_plot_gate.filters Man page Source code
cyto_plot_gate.list Man page Source code
cyto_plot_gate.polygonGate Man page Source code
cyto_plot_gate.quadGate Man page Source code
cyto_plot_gate.rectangleGate Man page Source code
cyto_plot_gating_scheme Man page Source code
cyto_plot_gating_scheme.GatingHierarchy Man page Source code
cyto_plot_gating_scheme.GatingSet Man page Source code
cyto_plot_gating_tree Man page Source code
cyto_plot_gating_tree.GatingHierarchy Man page Source code
cyto_plot_gating_tree.GatingSet Man page Source code
cyto_plot_gating_tree.gatingTemplate Man page Source code
cyto_plot_label Man page Source code
cyto_plot_label.GatingHierarchy Man page Source code
cyto_plot_label.flowFrame Man page Source code
cyto_plot_labeller Man page Source code
cyto_plot_layout Man page Source code
cyto_plot_new Man page Source code
cyto_plot_point Man page Source code
cyto_plot_point.flowFrame Man page Source code
cyto_plot_point.list Man page Source code
cyto_plot_profile Man page Source code
cyto_plot_profile.GatingHierarchy Man page Source code
cyto_plot_profile.GatingSet Man page Source code
cyto_plot_profile.flowFrame Man page Source code
cyto_plot_profile.flowSet Man page Source code
cyto_plot_record Man page Source code
cyto_plot_reset Man page Source code
cyto_plot_save Man page Source code
cyto_plot_save_reset Man page Source code
cyto_plot_theme Man page Source code
cyto_plot_theme_args Man page Source code
cyto_plot_theme_reset Man page Source code
cyto_sample Man page Source code
cyto_sample.GatingHierarchy Man page Source code
cyto_sample.GatingSet Man page Source code
cyto_sample.flowFrame Man page Source code
cyto_sample.flowSet Man page Source code
cyto_sample.list Man page Source code
cyto_save Man page Source code
cyto_save.GatingHierarchy Man page Source code
cyto_save.GatingSet Man page Source code
cyto_save.flowFrame Man page Source code
cyto_save.flowSet Man page Source code
cyto_select Man page Source code
cyto_setup Man page Source code
cyto_spillover_compute Man page Source code
cyto_spillover_edit Man page Source code
cyto_spillover_edit.GatingSet Man page Source code
cyto_spillover_edit.flowSet Man page Source code
cyto_spillover_extract Man page Source code
cyto_spillover_spread_compute Man page Source code
cyto_split Man page Source code
cyto_stats_compute Man page Source code
cyto_stats_compute.GatingHierarchy Man page Source code
cyto_stats_compute.GatingSet Man page Source code
cyto_stats_compute.flowFrame Man page Source code
cyto_stats_compute.flowSet Man page Source code
cyto_transform Man page Source code
cyto_transform.default Man page Source code
cyto_transform.transformList Man page Source code
cyto_transform.transformerList Man page Source code
cyto_transform_extract Man page Source code
cyto_transformer_arcsinh Man page Source code
cyto_transformer_arcsinh.GatingHierarchy Man page Source code
cyto_transformer_arcsinh.GatingSet Man page Source code
cyto_transformer_arcsinh.flowFrame Man page Source code
cyto_transformer_arcsinh.flowSet Man page Source code
cyto_transformer_biex Man page Source code
cyto_transformer_biex.GatingHierarchy Man page Source code
cyto_transformer_biex.GatingSet Man page Source code
cyto_transformer_biex.flowFrame Man page Source code
cyto_transformer_biex.flowSet Man page Source code
cyto_transformer_combine Man page Source code
cyto_transformer_extract Man page Source code
cyto_transformer_log Man page Source code
cyto_transformer_log.GatingHierarchy Man page Source code
cyto_transformer_log.GatingSet Man page Source code
cyto_transformer_log.flowFrame Man page Source code
cyto_transformer_log.flowSet Man page Source code
cyto_transformer_logicle Man page Source code
cyto_transformer_logicle.GatingHierarchy Man page Source code
cyto_transformer_logicle.GatingSet Man page Source code
cyto_transformer_logicle.flowFrame Man page Source code
cyto_transformer_logicle.flowSet Man page Source code
data_editor Man page Source code
fftRtsne Man page Source code
file_exists Source code
file_ext Source code
file_ext_append Source code
file_ext_remove Source code
file_sort Source code
file_wd_check Man page Source code
linesIntercept Source code
match_ind Source code
DillonHammill/CytoExploreR documentation built on March 2, 2023, 7:34 a.m.

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