View source: R/cyto_plot-helpers.R
cyto_plot_save | R Documentation |
Save High Resolution cyto_plot Images
cyto_plot_save(
save_as,
width = 7,
height = 7,
units = "in",
res = 300,
multiple = FALSE,
layout = NULL,
...
)
save_as |
name of the file to which the plot should be saved (including the file extension). Supported file formats include png, tiff, jpeg, svg and pdf. |
width |
numeric indicating the width of exported plot in |
height |
numeric indicating the height of the exported plot in
|
units |
units to be used to set plot size, can be either pixels
( |
res |
resolution in ppi, set to 300 by default. |
multiple |
logical indicating whether multiple pages should be saved to
separate numbered files, set to |
layout |
a vector or matrix defining the custom layout of the plot to be created using 'cyto_plot_layout', set to NULL by default to use standard 'cyto_plot' layout. Custom layouts are required when making multiple 'cyto_plot' calls in the same image. |
... |
additional arguments for the appropriate |
Dillon Hammill (Dillon.Hammill@anu.edu.au)
cairo
png
## Not run:
library(CytoExploreRData)
# Load samples into GatingSet
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- cyto_compensate(gs)
# Transform fluorescent channels
gs <- cyto_transform(gs)
# Apply gatingTemplate
cyto_gatingTemplate_apply(gs, Activation_gatingTemplate)
# Save png image of gating scheme after plotting
cyto_plot_save("Gating-Scheme.png",
width = 20,
height = 16
)
cyto_plot_gating_scheme(gs[[1]])
# Save multiple pages to the same pdf file
cyto_plot_save("CD4-T-Cells.pdf",
height = 8,
width = 16,
multiple = TRUE
)
cyto_plot(gs,
parent = "CD4 T Cells",
alias = "",
channels = c("Alexa Fluor 647-A", "7-AAD-A"),
layout = c(1, 2)
)
## End(Not run)
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