cyto_convert: Convert between cytometry objects

In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

Convert between cytometry objects

Description

Convert between cytometry objects

Usage

cyto_convert(x, ...)

## S3 method for class 'flowFrame'
cyto_convert(x, return = "flowFrame", ...)

## S3 method for class 'flowSet'
cyto_convert(x, return = "flowSet", ...)

## S3 method for class 'GatingHierarchy'
cyto_convert(x, parent = "root", return = "GatingHierarchy", ...)

## S3 method for class 'GatingSet'
cyto_convert(x, parent = "root", return = "GatingSet", ...)

Arguments

x	flowFrame, flowSet, GatingHierarchy, GatingSet.
...	not in use.
return	either 'flowFrame', 'flowSet', 'GatingHierarchy', 'GatingSet', coerced 'flowFrame list' or coerced 'flowSet list'. GatingSet and flowSet objects can also be converted to a 'list of flowFrames'.
parent	name of parent population to extract from GatingHierarchy and GatingSet objects.

Value

object specified by 'return' argument.

Author(s)

Dillon Hammill, [e-mail]

Examples

# Load in CytoExploreRData to access data
library(CytoExploreRData)

# Convert flowSet to 'list of flowFrames'
cyto_convert(Activation, "list of flowFrames")

# Convert flowSet to 'flowFrame'
cyto_convert(Activation, "flowFrame")

# Convert GatingSet to flowFrame
cyto_convert(GatingSet(Activation), "flowFrame", parent = "root")

DillonHammill/CytoExploreR documentation built on March 2, 2023, 7:34 a.m.