cyto_filter: Filter samples based on experiment variables

In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

Filter samples based on experiment variables

Description

Filter samples based on experiment variables

Usage

cyto_filter(x, ...)

Arguments

x	object of class flowSet or GatingSet.
...	tidyverse-style subsetting using comma separated logical predicates based on experimental variables stored in cyto_details(x). See examples below for demonstration.

Value

flowSet or GatingSet restricted to samples which meet the filtering criteria.

Author(s)

Dillon Hammill, [e-mail]

Examples

# Load in CytoExploreRData to access data
library(CytoExploreRData)

# Look at experiment details
cyto_details(Activation)

# Select Stim-C samples with 0 and 500 nM OVA concentrations
fs <- cyto_filter(
  Activation,
  Treatment == "Stim-C",
  OVAConc %in% c(0, 500)
)

# Select Stim-A and Stim-C treatment groups
fs <- cyto_filter(
  Activation,
  Treatment %in% c("Stim-A", "Stim-C")
)

DillonHammill/CytoExploreR documentation built on March 2, 2023, 7:34 a.m.