View source: R/cyto_gate-helpers.R
cyto_gate_bool | R Documentation |
Add boolean gate to GatingSet and gatingTemplate
cyto_gate_bool( x, parent = NULL, alias = NULL, logic = NULL, gatingTemplate = NULL )
x |
object of class |
parent |
name of the parent population to which the boolean gates should be added, set to the most recent common ancestor by default. |
alias |
vector of names for the boolean populations. |
logic |
vector of logic to define each of the boolean populations. |
gatingTemplate |
name of the |
object of class GatingSet
with new boolean gates and updated
gatingTemplate csv file with appropriate entries.
Dillon Hammill, Dillon.Hammill@anu.edu.au
## Not run: library(CytoExploreRData) # Activation GatingSet gs <- GatingSet(Activation) # Compensation gs <- cyto_compensate(gs) # Transformations gs <- cyto_transform(gs) # Gating gs <- cyto_gatingTemplate_apply(gs, Activation_gatingTemplate) # Add boolean gate gs <- cyto_gate_bool(gs, alias = "CD4+CD8", logic = "CD4 T Cells|CD8 T Cells") ## End(Not run)
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