cyto_gate_bool: Add boolean gate to GatingSet and gatingTemplate

In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

Description

Add boolean gate to GatingSet and gatingTemplate

Usage

cyto_gate_bool(
  x,
  parent = NULL,
  alias = NULL,
  logic = NULL,
  gatingTemplate = NULL
)

Arguments

x	object of class GatingSet.
parent	name of the parent population to which the boolean gates should be added, set to the most recent common ancestor by default.
alias	vector of names for the boolean populations.
logic	vector of logic to define each of the boolean populations.
gatingTemplate	name of the gatingTemplate csv file (e.g. "gatingTemplate.csv") where the new entries should be saved.

Value

object of class GatingSet with new boolean gates and updated gatingTemplate csv file with appropriate entries.

Author(s)

Dillon Hammill, [e-mail]

Examples

## Not run: 
library(CytoExploreRData)

# Activation GatingSet
gs <- GatingSet(Activation)

# Compensation
gs <- cyto_compensate(gs)

# Transformations
gs <- cyto_transform(gs)

# Gating
gs <- cyto_gatingTemplate_apply(gs, Activation_gatingTemplate)

# Add boolean gate
gs <- cyto_gate_bool(gs,
alias = "CD4+CD8",
logic = "CD4 T Cells|CD8 T Cells")

## End(Not run)

DillonHammill/CytoExploreR documentation built on July 9, 2020, 1:53 a.m.