cyto_markers_edit: Assign marker names to flowFrame or flowSet

In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

Assign marker names to flowFrame or flowSet

Description

cyto_markers_edit opens an editable table containing a list of channels and markers for a flowFrame, flowSet, GatingSet or GatingSet. Users can edit the name or desc columns with updated channel names or marker names respectively. These entries will be updated in the x upon closing the window and saved to a "Experiment-markers.csv" file for future use.

Usage

cyto_markers_edit(x, file = NULL, ...)

Arguments

x	object of class flowFrame, flowSet, GatingSet or GatingSet.
file	name of csv file containing columns 'channel' and 'marker'.
...	additional arguments passed to data_editor.

Value

save inputs to "Experiment-Markers.csv" and returns updated samples.

Author(s)

Dillon Hammill, [e-mail]

Examples

## Not run: 
# Load in CytoExploreRData to access data
library(CytoExploreRData)

# Load in samples
fs <- Activation

# Add marker names to channels - edit table
fs <- cyto_markers_edit(fs)

## End(Not run)

DillonHammill/CytoExploreR documentation built on March 2, 2023, 7:34 a.m.