cyto_load | R Documentation |
cyto_load
is a convenient wrapper around
list.files
and
load_cytoset_from_fcs
which makes it easy to load .fcs files into a cytoset. cyto_load
is
also a wrapper around load_gs
to load
saved GatingSet objects.
cyto_load(
path = ".",
select = NULL,
exclude = NULL,
sort = TRUE,
barcode = FALSE,
restrict = FALSE,
...
)
path |
points to the location of the .fcs files to read in. Preferably the name of folder in current working directory. |
select |
vector of file names to select when loading files, set to NULL be default to select all files in the specified directory. |
exclude |
vector of file names to exclude when loading files, set to NULL by default to load all files in the specified directory. |
sort |
logical indicating whether attempts should be made to sort the
files by name prior to loading, set to |
barcode |
logical indicating whether the flowFrames should be barcoded
using |
restrict |
logical indicating whether unassigned channels should be
dropped from the returned cytoset, set to FALSE by default. See
|
... |
additional arguments passed to |
object of class cytoset
or
GatingSet
.
Dillon Hammill, Dillon.Hammill@anu.edu.au
# Load in CytoExploreRData to access data
library(CytoExploreRData)
# Get path to Activation .fcs files in CytoExploreRData
datadir <- system.file("extdata", package = "CytoExploreRData")
path <- paste0(datadir, "/Activation")
# Load in .fcs files into cytoset
cs <- cyto_load(path)
# cs is a cytoset
class(cs)
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