View source: R/cyto_gate-helpers.R
cyto_gate_extract | R Documentation |
Extract Saved Gate(s) from gatingTemplate.
cyto_gate_extract(parent, alias, gatingTemplate = NULL, ...)
parent |
name of the parental population. |
alias |
name of the population for which the gate must be extracted. |
gatingTemplate |
name of the |
... |
not used. |
Dillon Hammill, Dillon.Hammill@anu.edu.au
library(CytoExploreRData)
# Bypass working directory check for external files
options("CytoExploreR_wd_check" = FALSE)
# Load in samples
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- cyto_compensate(gs)
# Transform fluorescent channels
gs <- cyto_transform(gs)
# Gate using cyto_gate_draw
gt <- Activation_gatingTemplate
gt_gating(gt, gs)
# gatingTemplate
gtfile <- system.file("extdata",
"Activation-gatingTemplate.csv",
package = "CytoExploreRData"
)
# Extract T Cells gate
cyto_gate_extract("Live Cells", "T Cells", gatingTemplate = gtfile)
# Reset CytoExploreR_wd_check to default
options("CytoExploreR_wd_check" = TRUE)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.