View source: R/cyto_gatingTemplate-helpers.R
cyto_gatingTemplate_apply | R Documentation |
A convenient wrapper for
gatingTemplate
and
gt_gating
to apply a gatingTemplate csv
file to a GatingSet.
cyto_gatingTemplate_apply(x, gatingTemplate = NULL, ...)
x |
object of class |
gatingTemplate |
name of the gatingTemplate csv file which contains the
gates to be applied to |
... |
additional arguments passed to gating. |
NULL and update the GatingHierarchy/ GatingSet in the global environment with the gates in the gatingTemplate.
## Not run:
library(CytoExploreRData)
# Load in samples
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)
# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(fs))
gs <- transform(gs, trans)
# Apply gatingTemplate in working directory to GatingSet
cyto_gatingTemplate_apply(gs, "gatingTemplate.csv")
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.