cyto_export | R Documentation |
Simply a wrapper around CytoML gatingset_to_cytobank
and
gatingset_to _flowjo
to export your CytoExploreR analyses in a format
accepted by these platforms. Users will need to have docker
running on
their computers to export flowJo workspace files.
cyto_export(x, save_as = NULL, ...)
x |
object of class GatingSet to export. |
save_as |
the name of a flowJo workspace file with .wsp extension or a Cytobank xml file with .xml extension. |
... |
additional arguments passed to |
Dillon Hammill, Dillon.Hammill@anu.edu.au
## Not run:
library(CytoExploreRData)
library(CytoML)
# Activation GatingSet
gs <- GatingSet(Activation)
# Compensation
gs <- cyto_compensate(gs)
# Transformations
gs <- cyto_transform(gs)
# Gating
gs <- cyto_gatingTemplate_apply(gs, Activation_gatingTemplate)
# Export to cytobank xml
cyto_export(gs, "cytobank.xml")
# Export to flowjo workspace
cyto_export(gs, "flowjo.wsp")
## End(Not run)
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