View source: R/cyto_plot_density.R
cyto_plot_density | R Documentation |
Add density distributions to empty plots
cyto_plot_density(x, ...)
## S3 method for class 'flowFrame'
cyto_plot_density(
x,
channel,
overlay = NA,
display = 1,
density_modal = TRUE,
density_smooth = 1.5,
density_stack = 0.5,
density_cols = NA,
density_fill = NA,
density_fill_alpha = 1,
density_line_type = 1,
density_line_width = 1,
density_line_col = "black",
...
)
## S3 method for class 'list'
cyto_plot_density(
x,
density_cols = NA,
density_fill = NA,
density_fill_alpha = 1,
density_line_type = 1,
density_line_width = 1,
density_line_col = "black",
...
)
x |
list of density objects for plotting |
... |
not in use. |
channel |
name of the channels to be used to construct the plot. |
overlay |
list of flowFRame objects to overlay. |
display |
controls the number or percentage of events to display, set to 1 by default to display all events. |
density_modal |
logical indicating whether density should be normalised
to mode and presented as a percentage. Set to |
density_smooth |
smoothing parameter passed to
|
density_stack |
numeric [0,1] indicating the degree of offset for overlaid populations, set to 0.5 by default. |
density_cols |
vector of colls to use to select density_fill colours |
density_fill |
colour(s) used to fill polygons. |
density_fill_alpha |
numeric [0,1] used to control fill transparency, set to 1 by default to remove transparency. |
density_line_type |
line type(s) to use for border(s), set to solid lines by default. |
density_line_width |
line width for border. |
density_line_col |
colour(s) for border line, set to "black" by default. |
Dillon Hammill, Dillon.Hammill@anu.edu.au
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