cyto_plot_density: Add density distributions to empty plots
In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

cyto_plot_density

R Documentation

Add density distributions to empty plots

Description

Add density distributions to empty plots

Usage

cyto_plot_density(x, ...)

## S3 method for class 'flowFrame'
cyto_plot_density(
  x,
  channel,
  overlay = NA,
  display = 1,
  density_modal = TRUE,
  density_smooth = 1.5,
  density_stack = 0.5,
  density_cols = NA,
  density_fill = NA,
  density_fill_alpha = 1,
  density_line_type = 1,
  density_line_width = 1,
  density_line_col = "black",
  ...
)

## S3 method for class 'list'
cyto_plot_density(
  x,
  density_cols = NA,
  density_fill = NA,
  density_fill_alpha = 1,
  density_line_type = 1,
  density_line_width = 1,
  density_line_col = "black",
  ...
)

Arguments

`x`	list of density objects for plotting
`...`	not in use.
`channel`	name of the channels to be used to construct the plot.
`overlay`	list of flowFRame objects to overlay.
`display`	controls the number or percentage of events to display, set to 1 by default to display all events.
`density_modal`	logical indicating whether density should be normalised to mode and presented as a percentage. Set to `TRUE` by default.
`density_smooth`	smoothing parameter passed to `density` to adjust kernel density.
`density_stack`	numeric [0,1] indicating the degree of offset for overlaid populations, set to 0.5 by default.
`density_cols`	vector of colls to use to select density_fill colours
`density_fill`	colour(s) used to fill polygons.
`density_fill_alpha`	numeric [0,1] used to control fill transparency, set to 1 by default to remove transparency.
`density_line_type`	line type(s) to use for border(s), set to solid lines by default.
`density_line_width`	line width for border.
`density_line_col`	colour(s) for border line, set to "black" by default.