cyto_plot_density: Add density distributions to empty plots

In DillonHammill/CytoExploreR: Interactive Analysis of Cytometry Data

Add density distributions to empty plots

Description

Add density distributions to empty plots

Usage

cyto_plot_density(x, ...)

## S3 method for class 'flowFrame'
cyto_plot_density(
  x,
  channel,
  overlay = NA,
  display = 1,
  density_modal = TRUE,
  density_smooth = 1.5,
  density_stack = 0.5,
  density_cols = NA,
  density_fill = NA,
  density_fill_alpha = 1,
  density_line_type = 1,
  density_line_width = 1,
  density_line_col = "black",
  ...
)

## S3 method for class 'list'
cyto_plot_density(
  x,
  density_cols = NA,
  density_fill = NA,
  density_fill_alpha = 1,
  density_line_type = 1,
  density_line_width = 1,
  density_line_col = "black",
  ...
)

Arguments

x	list of density objects for plotting
...	not in use.
channel	name of the channels to be used to construct the plot.
overlay	list of flowFRame objects to overlay.
display	controls the number or percentage of events to display, set to 1 by default to display all events.
density_modal	logical indicating whether density should be normalised to mode and presented as a percentage. Set to TRUE by default.
density_smooth	smoothing parameter passed to density to adjust kernel density.
density_stack	numeric [0,1] indicating the degree of offset for overlaid populations, set to 0.5 by default.
density_cols	vector of colls to use to select density_fill colours
density_fill	colour(s) used to fill polygons.
density_fill_alpha	numeric [0,1] used to control fill transparency, set to 1 by default to remove transparency.
density_line_type	line type(s) to use for border(s), set to solid lines by default.
density_line_width	line width for border.
density_line_col	colour(s) for border line, set to "black" by default.

Author(s)

Dillon Hammill, [e-mail]

DillonHammill/CytoExploreR documentation built on March 2, 2023, 7:34 a.m.