View source: R/cyto_plot_contour.R
cyto_plot_contour | R Documentation |
Add contour lines to cyto_plot
cyto_plot_contour(x, ...) ## S3 method for class 'flowFrame' cyto_plot_contour( x, channels, contour_lines = 15, contour_line_type = 1, contour_line_width = 1, contour_line_col = "black", contour_line_alpha = 1, ... ) ## S3 method for class 'flowSet' cyto_plot_contour( x, channels, contour_lines = 15, contour_line_type = 1, contour_line_width = 1, contour_line_col = "black", contour_line_alpha = 1, ... ) ## S3 method for class 'list' cyto_plot_contour( x, channels, contour_lines = 15, contour_line_type = 1, contour_line_width = 1, contour_line_col = "black", contour_line_alpha = 1, ... )
x |
either an object of class
|
... |
not in use. |
channels |
channels used to construct the existing cyto_plot. |
contour_lines |
numeric indicating the number of levels to use for contour lines, set to 15 by default. |
contour_line_type |
type of line to use for contour lines, set to 1 by default. |
contour_line_width |
line width for contour lines, set to 1 by default. |
contour_line_col |
colour to use for contour lines, set to "black" by default. |
contour_line_alpha |
numeric [0,1] to control transparency of contour lines, set to 1 by default to remove transparency. |
Dillon Hammill, Dillon.Hammill@anu.edu.au
library(CytoExploreRData) # Load in Samples fs <- Activation # Apply compensation fs <- cyto_compensate(fs) # Transform fluorescent channels trans <- cyto_transformer_logicle(fs) fs <- cyto_transform(fs, trans) # Plot cyto_plot(fs[[32]], channels = c("Alexa Fluor 488-A", "Alexa Fluor 700-A"), axes_trans = trans ) # Contour lines cyto_plot_contour(fs[[32]], channels = c("Alexa Fluor 488-A", "Alexa Fluor 700-A"), contour_lines = 20 )
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