View source: R/cyto_plot_explore.R
cyto_plot_explore | R Documentation |
cyto_plot_explore
is an extremely useful tool to explore all aspects
of your cytometry data. cyto_plot_explore
constructs a faceted plot
for each of the supplied channels_x
by plotting them against all the
supplied channels_y
. Thus providing a rapid means to explore the data
in all available channels.
## S3 method for class 'GatingSet' cyto_plot_explore( x, parent = NULL, channels_x = NULL, channels_y = NULL, axes_trans = NA, layout, popup = FALSE, title = NA, header, header_text_font = 2, header_text_size = 1, header_text_col = "black", ... ) ## S3 method for class 'GatingHierarchy' cyto_plot_explore( x, parent = NULL, channels_x = NULL, channels_y = NULL, axes_trans = NA, layout, popup = FALSE, title = NA, header, header_text_font = 2, header_text_size = 1, header_text_col = "black", ... ) ## S3 method for class 'flowSet' cyto_plot_explore( x, channels_x = NULL, channels_y = NULL, axes_trans = NA, layout, popup = FALSE, title = NA, header, header_text_font = 2, header_text_size = 1, header_text_col = "black", ... ) ## S3 method for class 'flowFrame' cyto_plot_explore( x, channels_x = NULL, channels_y = NULL, axes_trans = NA, layout, popup = FALSE, title = NA, header, header_text_font = 2, header_text_size = 1, header_text_col = "black", ... )
x |
an object of class |
parent |
name of the parent population to plot when a
|
channels_x |
vector of channels to explore, set to all fluorescent
channels by default. Each channel in |
channels_y |
vector of channels to plot each channels_x against, set to all channels by default. |
axes_trans |
object of class transformerList passed to |
layout |
vector of grid dimensions |
popup |
logical indicating whether plots should be constructed in a pop-up window. |
title |
text to include above each plot, set to NA by default to remove titles. |
header |
title to use for the plots, set to the name of the sample by default. Turn off the header by setting this argument to NA. |
header_text_font |
font to use for header text, set to 2 by default. |
header_text_size |
text size for header, set to 1 by default. |
header_text_col |
colour for header text, set to "black" by default. |
... |
additional arguments passed to |
Dillon Hammill (Dillon.Hammill@anu.edu.au)
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