View source: R/cyto_plot_point.R
cyto_plot_point | R Documentation |
Add points and contour lines to empty cyto_plot
cyto_plot_point(x, ...) ## S3 method for class 'flowFrame' cyto_plot_point( x, channels, overlay = NA, display = 1, point_shape = ".", point_size = 2, point_col_scale = NA, point_cols = NA, point_col = NA, point_col_alpha = 1, contour_lines = 0, contour_line_type = 1, contour_line_width = 1, contour_line_col = "black", contour_line_alpha = 1, ... ) ## S3 method for class 'list' cyto_plot_point( x, channels, display = 1, point_shape = ".", point_size = 2, point_col_scale = NA, point_cols = NA, point_col = NA, point_col_alpha = 1, contour_lines = 0, contour_line_type = 1, contour_line_width = 1, contour_line_col = "black", contour_line_alpha = 1, ... )
x |
object of class |
... |
not in use. |
channels |
names of the channels used to construct the plot. |
overlay |
optional argument if x is a flowFrame to overlay a list of flowFrame objects. |
display |
controls the number or percentage of events to display, set to 1 by default to display all events. |
point_shape |
shape(s) to use for points in 2-D scatterplots, set to
|
point_size |
numeric to control the size of points in 2-D scatter plots set to 2 by default. |
point_col_scale |
vector of ordered colours to use for the density colour gradient of points. |
point_cols |
vector colours to draw from when selecting colours for points if none are supplied to point_col. |
point_col |
colour(s) to use for points in 2-D scatter plots, set to NA by default to use a blue-red density colour scale. |
point_col_alpha |
numeric [0,1] to control point colour transparency in 2-D scatter plots, set to 1 by default to use solid colours. |
contour_lines |
numeric indicating the number of levels to use for contour lines, set to 0 by default to exclude contour lines. |
contour_line_type |
type of line to use for contour lines, set to 1 by default. |
contour_line_width |
line width for contour lines, set to 2 by default. |
contour_line_col |
colour to use for contour lines, set to "black" by default. |
contour_line_alpha |
numeric [0,1] to control transparency of contour lines, set to 1 by default to remove transparency. |
Dillon Hammill, Dillon.Hammill@anu.edu.au
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