View source: R/cyto_plot-helpers.R
cyto_plot_layout | R Documentation |
cyto_plot_layout()
sets the panel layout dimensions for combining
different types of cyto_plot plots. Make a call to cyto_plot_layout()
prior to making multiple calls to cyto_plot()
.
cyto_plot_layout(layout = NULL)
layout |
either a vector of the form c(nrow, ncol) defining the
dimensions of the plot or a matrix defining a more sophisticated layout
(see |
Dillon Hammill (Dillon.Hammill@anu.edu.au)
library(CytoExploreRData)
# Load samples into GatingSet
fs <- Activation
gs <- GatingSet(fs)
# Apply compensation
gs <- compensate(gs, fs[[1]]@description$SPILL)
# Transform fluorescent channels
trans <- estimateLogicle(gs[[4]], cyto_fluor_channels(gs))
gs <- transform(gs, trans)
# Apply gatingTemplate
gt <- Activation_gatingTemplate
gt_gating(gt, gs)
# Set out plot layout
cyto_plot_layout(c(1,2))
# Add 2D plot
cyto_plot(gs[[4]],
parent = "CD4 T Cells",
alias = "",
channels = c("Alexa Fluor 647-A", "7-AAD-A"),
layout = FALSE
)
# Add 1D plot
cyto_plot(gs,
parent = "CD4 T Cells",
alias = "",
channels = "7-AAD-A",
density_stack = 0.6,
layout = FALSE
)
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