View source: R/cyto_transformers.R
cyto_transformer_logicle | R Documentation |
CytoExploreR
implementation of flowCore
logicle transformation
which allows the use of multiple samples to estimate transformation
parameters, always returns a transformerList
object and displays the
result of the transformation(s) using cyto_plot
. To combine different
types of transformations have a look at cyto_transformer_combine
.
cyto_transform
should be used to apply the transformations to the
data.
## S3 method for class 'GatingSet' cyto_transformer_logicle( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) ## S3 method for class 'GatingHierarchy' cyto_transformer_logicle( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) ## S3 method for class 'flowSet' cyto_transformer_logicle( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) ## S3 method for class 'flowFrame' cyto_transformer_logicle( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... )
x |
an object of class |
channels |
name(s) of channel(s)/marker(s) for which transformation functions must be generated. Set to all the fluorescent channels by default if no channels/markers are supplied. |
parent |
name of the parent population to use for generating the transformation(s). |
select |
list of selection criteria passed to |
plot |
logical indicating whether the results of transformations should
be plotted using |
popup |
logical indicating whether the plots should be constructed in a pop-up window. |
display |
number or frequency of events to display in plots, set to
25000 events by default. See |
axes_limits |
options include |
... |
additional arguments passed to
|
a transformerList
object.
Dillon Hammill, Dillon.Hammill@anu.edu.au
estimateLogicle
estimateLogicle
cyto_transformer_arcsinh
cyto_transformer_biex
cyto_transformer_combine
cyto_transform
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