totalRepeatSpace: Quantify the total repeat space from Repeat Masker output in...
In HajkD/LTRpred: De novo functional annotation of retrotransposons
View source: R/totalRepeatSpace.R
totalRepeatSpace R Documentation
Quantify the total repeat space from Repeat Masker output in Mbp
Description
Given a Repeat Masker annotation file this function quantifies
the total repeat space in mega base pairs (Mbp).
Usage
totalRepeatSpace(file, repeat.type = "all")
Arguments
file
path to Repeat Masker output file.
repeat.type
type of element for which total repeat space shall be quantified.
Options are:
-
repeat.type = "all" include all types of repeats.
-
repeat.type = "ltr" include only LTR retrotransposons.
Author(s)
Hajk-Georg Drost
See Also
meta.seq.space
HajkD/LTRpred documentation built on April 22, 2022, 4:35 p.m.
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View source: R/totalRepeatSpace.R
| totalRepeatSpace | R Documentation |
Quantify the total repeat space from Repeat Masker output in Mbp
Description
Given a Repeat Masker annotation file this function quantifies
the total repeat space in mega base pairs (Mbp).
Usage
totalRepeatSpace(file, repeat.type = "all")
Arguments
file |
path to Repeat Masker output file. |
repeat.type |
type of element for which total repeat space shall be quantified. Options are:
|
Author(s)
Hajk-Georg Drost
See Also
meta.seq.space
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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