fastqDump: Calls the fastq-dump executable

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Calls the fastq-dump executable.

Usage

## Default S3 method:
fastqDump(..., bSplit3=TRUE, bGzip=TRUE, outPath="fastqData", pathnames=character(0L),
  verbose=FALSE)

Arguments

...	Additional arguments passed to systemFastqDump().
bSplit3	If TRUE, use '–split-3' option to produce two fastq files for paired-end data
bGzip	If TRUE, gzip output fastq files
outPath	Directory where output fastq files will reside at completion
pathnames	Zero or more input pathnames.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.