process.BwaAlignment: Runs the BWA aligner

Description Usage Arguments Value Author(s)

Description

Runs the BWA aligner on all input files. The generated BAM files are all sorted and indexed.

Usage

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## S3 method for class 'BwaAlignment'
process(this, ..., skip=TRUE, force=FALSE, verbose=FALSE)

Arguments

...

Not used.

skip

If TRUE, already processed files are skipped.

verbose

See Verbose.

Value

Returns a BamDataSet.

Author(s)

Henrik Bengtsson


HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.