samtoolsView: Calls the samtools 'view' command

Description Usage Arguments Author(s)

Description

Calls the samtools 'view' command.

Usage

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## Default S3 method:
samtoolsView(pathname, pathnameD, ..., verbose=FALSE)

Arguments

pathname

A SAM/BAM file.

pathnameD

The destination pathname.

...

Additional arguments specifying samtools 'view' switches passed to systemSamtools().

verbose

See Verbose.

Author(s)

Henrik Bengtsson


HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.